View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10239_low_1 (Length: 427)

Name: NF10239_low_1
Description: NF10239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10239_low_1
NF10239_low_1
[»] scaffold0139 (1 HSPs)
scaffold0139 (16-412)||(23229-23624)
[»] scaffold0679 (1 HSPs)
scaffold0679 (248-412)||(1662-1827)
[»] chr6 (24 HSPs)
chr6 (248-412)||(28709376-28709541)
chr6 (53-194)||(18982484-18982625)
chr6 (16-84)||(15173415-15173483)
chr6 (15-102)||(27329942-27330029)
chr6 (15-102)||(27390682-27390769)
chr6 (53-113)||(10446210-10446270)
chr6 (17-72)||(28103411-28103466)
chr6 (53-131)||(21683074-21683152)
chr6 (40-137)||(19825472-19825569)
chr6 (16-84)||(15900616-15900684)
chr6 (16-72)||(27852240-27852296)
chr6 (16-72)||(20733206-20733262)
chr6 (53-121)||(23658074-23658142)
chr6 (54-137)||(20410512-20410595)
chr6 (43-113)||(29045264-29045334)
chr6 (194-265)||(25921832-25921903)
chr6 (53-137)||(15998858-15998942)
chr6 (53-137)||(34140455-34140537)
chr6 (53-92)||(34153071-34153109)
chr6 (194-255)||(29045104-29045166)
chr6 (53-102)||(15890711-15890760)
chr6 (54-102)||(7827976-7828024)
chr6 (53-113)||(13285741-13285801)
chr6 (54-102)||(23150287-23150335)
[»] chr7 (48 HSPs)
chr7 (277-412)||(11391141-11391276)
chr7 (40-113)||(58399-58472)
chr7 (40-137)||(19195581-19195677)
chr7 (53-137)||(708428-708512)
chr7 (53-121)||(8513752-8513820)
chr7 (53-137)||(15575648-15575732)
chr7 (16-84)||(16549967-16550035)
chr7 (16-84)||(16615627-16615695)
chr7 (16-72)||(19485935-19485991)
chr7 (53-137)||(43745625-43745709)
chr7 (53-120)||(8488093-8488160)
chr7 (53-195)||(33556104-33556244)
chr7 (15-72)||(30820112-30820169)
chr7 (53-134)||(47095424-47095505)
chr7 (53-113)||(13744509-13744569)
chr7 (16-84)||(29052144-29052212)
chr7 (53-113)||(38299741-38299801)
chr7 (53-121)||(18874664-18874734)
chr7 (15-69)||(46579720-46579774)
chr7 (53-113)||(8930764-8930824)
chr7 (53-137)||(20252181-20252265)
chr7 (53-113)||(36300640-36300700)
chr7 (53-255)||(13315081-13315293)
chr7 (54-113)||(15720772-15720831)
chr7 (54-107)||(43276744-43276797)
chr7 (53-113)||(18570640-18570700)
chr7 (54-113)||(25943260-25943319)
chr7 (16-67)||(36685108-36685159)
chr7 (53-107)||(3287743-3287797)
chr7 (53-195)||(15700734-15700873)
chr7 (53-113)||(16250221-16250281)
chr7 (58-113)||(15700887-15700942)
chr7 (53-137)||(48212726-48212812)
chr7 (54-111)||(19283050-19283108)
chr7 (53-121)||(4690662-4690730)
chr7 (194-246)||(38295452-38295504)
chr7 (194-233)||(47975041-47975080)
chr7 (40-102)||(12127149-12127211)
chr7 (65-130)||(831861-831926)
chr7 (65-130)||(1197041-1197106)
chr7 (199-228)||(12754820-12754849)
chr7 (194-254)||(19282887-19282948)
chr7 (53-102)||(20214151-20214200)
chr7 (53-102)||(20586356-20586405)
chr7 (54-102)||(8851159-8851207)
chr7 (54-102)||(12372278-12372326)
chr7 (54-102)||(12465260-12465308)
chr7 (40-84)||(13147458-13147502)
[»] chr3 (46 HSPs)
chr3 (277-412)||(5842683-5842818)
chr3 (53-194)||(29907550-29907692)
chr3 (53-194)||(29948716-29948858)
chr3 (53-194)||(29997870-29998012)
chr3 (40-135)||(14641534-14641629)
chr3 (16-102)||(24177698-24177784)
chr3 (53-137)||(14520415-14520499)
chr3 (17-84)||(36528889-36528956)
chr3 (16-84)||(15446830-15446898)
chr3 (53-137)||(17208493-17208577)
chr3 (16-72)||(37641466-37641522)
chr3 (54-113)||(54875474-54875533)
chr3 (15-84)||(16979934-16980003)
chr3 (53-113)||(3527156-3527216)
chr3 (17-84)||(3263926-3263993)
chr3 (53-115)||(6156701-6156763)
chr3 (40-113)||(6159398-6159471)
chr3 (15-72)||(52988819-52988876)
chr3 (53-113)||(2841505-2841565)
chr3 (53-121)||(14152398-14152466)
chr3 (53-113)||(14442168-14442228)
chr3 (53-113)||(22841278-22841338)
chr3 (54-113)||(17669698-17669757)
chr3 (54-113)||(17684835-17684894)
chr3 (15-66)||(31223813-31223864)
chr3 (22-72)||(14967218-14967268)
chr3 (53-113)||(12917305-12917365)
chr3 (61-113)||(45803338-45803390)
chr3 (54-121)||(5215632-5215699)
chr3 (53-109)||(24547197-24547253)
chr3 (53-113)||(24548953-24549013)
chr3 (28-72)||(52465345-52465389)
chr3 (66-113)||(50755266-50755313)
chr3 (65-130)||(2247877-2247942)
chr3 (16-72)||(1864329-1864385)
chr3 (194-246)||(12917463-12917515)
chr3 (53-121)||(15566729-15566797)
chr3 (16-72)||(44495570-44495628)
chr3 (194-228)||(6805077-6805111)
chr3 (53-102)||(40808000-40808049)
chr3 (53-102)||(44274422-44274471)
chr3 (54-102)||(17044970-17045018)
chr3 (54-102)||(17047130-17047178)
chr3 (54-102)||(17541438-17541486)
chr3 (54-102)||(22306583-22306631)
chr3 (53-154)||(25202086-25202187)
[»] chr1 (36 HSPs)
chr1 (54-194)||(22145666-22145807)
chr1 (40-194)||(8306518-8306672)
chr1 (16-137)||(24007187-24007308)
chr1 (15-84)||(51336501-51336570)
chr1 (16-84)||(12327705-12327773)
chr1 (16-84)||(29763594-29763662)
chr1 (53-137)||(38056671-38056755)
chr1 (53-137)||(50544841-50544925)
chr1 (53-137)||(28476733-28476817)
chr1 (16-84)||(46197707-46197775)
chr1 (15-84)||(50001498-50001567)
chr1 (16-72)||(21995626-21995682)
chr1 (53-113)||(34392761-34392821)
chr1 (53-162)||(12710811-12710920)
chr1 (43-113)||(17901783-17901853)
chr1 (53-113)||(635003-635063)
chr1 (57-137)||(24719514-24719593)
chr1 (53-113)||(45499535-45499595)
chr1 (54-107)||(20588637-20588690)
chr1 (54-107)||(20593175-20593228)
chr1 (53-130)||(8275988-8276065)
chr1 (43-113)||(6834169-6834239)
chr1 (53-88)||(7703140-7703175)
chr1 (194-255)||(6834006-6834068)
chr1 (194-255)||(17901952-17902014)
chr1 (53-107)||(35895098-35895152)
chr1 (16-72)||(23592906-23592962)
chr1 (194-228)||(24723610-24723644)
chr1 (53-106)||(21168933-21168986)
chr1 (199-228)||(21243892-21243921)
chr1 (16-74)||(27652352-27652412)
chr1 (54-102)||(16401917-16401963)
chr1 (54-102)||(19676715-19676763)
chr1 (54-102)||(21046049-21046097)
chr1 (194-246)||(21239193-21239245)
chr1 (16-72)||(41373404-41373460)
[»] scaffold0007 (2 HSPs)
scaffold0007 (53-194)||(16418-16560)
scaffold0007 (53-194)||(18700-18843)
[»] chr2 (28 HSPs)
chr2 (15-113)||(34491201-34491299)
chr2 (16-84)||(357903-357971)
chr2 (19-84)||(21080934-21080999)
chr2 (53-137)||(21315475-21315559)
chr2 (53-137)||(21335265-21335349)
chr2 (16-84)||(21915646-21915714)
chr2 (53-113)||(23801489-23801549)
chr2 (16-102)||(40912324-40912410)
chr2 (19-72)||(34858157-34858210)
chr2 (19-72)||(34873219-34873272)
chr2 (16-84)||(25184211-25184279)
chr2 (40-194)||(149487-149644)
chr2 (40-121)||(21369278-21369359)
chr2 (53-137)||(23610595-23610679)
chr2 (16-79)||(27484451-27484514)
chr2 (53-113)||(28344987-28345047)
chr2 (15-59)||(18240824-18240868)
chr2 (199-254)||(14183621-14183677)
chr2 (53-154)||(36734450-36734551)
chr2 (194-249)||(28652701-28652756)
chr2 (40-102)||(17307490-17307552)
chr2 (53-102)||(24516190-24516239)
chr2 (16-77)||(29602117-29602178)
chr2 (54-102)||(2523747-2523795)
chr2 (54-102)||(5031129-5031177)
chr2 (40-84)||(22501993-22502037)
chr2 (40-84)||(22509927-22509971)
chr2 (54-102)||(24780840-24780888)
[»] scaffold0676 (1 HSPs)
scaffold0676 (53-137)||(2850-2934)
[»] scaffold0138 (2 HSPs)
scaffold0138 (16-84)||(21119-21187)
scaffold0138 (16-84)||(34134-34202)
[»] chr8 (31 HSPs)
chr8 (16-84)||(19880844-19880912)
chr8 (16-84)||(23479104-23479172)
chr8 (15-120)||(12577866-12577970)
chr8 (54-137)||(18816295-18816378)
chr8 (40-121)||(22208254-22208335)
chr8 (16-84)||(17158925-17158993)
chr8 (53-113)||(21399710-21399770)
chr8 (53-113)||(21794203-21794263)
chr8 (16-84)||(26454730-26454798)
chr8 (53-137)||(36732411-36732495)
chr8 (54-137)||(21514660-21514743)
chr8 (16-84)||(16198858-16198926)
chr8 (54-130)||(22258306-22258382)
chr8 (16-72)||(41680095-41680151)
chr8 (15-69)||(22237011-22237065)
chr8 (53-113)||(22345157-22345217)
chr8 (53-113)||(22356817-22356877)
chr8 (53-113)||(22610266-22610326)
chr8 (58-113)||(22483779-22483834)
chr8 (54-115)||(18834413-18834474)
chr8 (53-137)||(4380616-4380700)
chr8 (53-113)||(23884164-23884222)
chr8 (65-130)||(18023567-18023632)
chr8 (53-137)||(21676499-21676581)
chr8 (53-137)||(21676592-21676674)
chr8 (53-137)||(21678845-21678927)
chr8 (53-113)||(22483931-22483990)
chr8 (65-113)||(38184923-38184971)
chr8 (16-71)||(23661330-23661385)
chr8 (40-107)||(36305997-36306063)
chr8 (40-84)||(20022026-20022070)
[»] chr5 (27 HSPs)
chr5 (53-137)||(16063720-16063804)
chr5 (16-84)||(17011750-17011818)
chr5 (16-84)||(31456982-31457050)
chr5 (16-72)||(10774626-10774682)
chr5 (53-137)||(18744843-18744927)
chr5 (53-113)||(32607315-32607375)
chr5 (15-72)||(21554264-21554321)
chr5 (15-72)||(21556910-21556967)
chr5 (16-84)||(30616636-30616704)
chr5 (40-111)||(21398630-21398701)
chr5 (54-121)||(23199207-23199274)
chr5 (16-84)||(29448862-29448930)
chr5 (58-107)||(1627071-1627120)
chr5 (53-137)||(660759-660841)
chr5 (16-69)||(26832658-26832711)
chr5 (16-59)||(22240881-22240924)
chr5 (16-59)||(22241877-22241920)
chr5 (16-59)||(22242873-22242916)
chr5 (16-59)||(22243869-22243912)
chr5 (53-134)||(6551289-6551370)
chr5 (59-113)||(31621969-31622023)
chr5 (53-154)||(20313227-20313328)
chr5 (16-66)||(17876243-17876293)
chr5 (16-74)||(36315476-36315534)
chr5 (53-102)||(21300043-21300092)
chr5 (53-102)||(31622121-31622170)
chr5 (16-72)||(41094780-41094836)
[»] chr4 (27 HSPs)
chr4 (16-84)||(15008985-15009053)
chr4 (53-137)||(14631104-14631188)
chr4 (53-137)||(16296907-16296991)
chr4 (16-84)||(40620554-40620622)
chr4 (53-112)||(10273377-10273436)
chr4 (17-84)||(14186980-14187047)
chr4 (53-113)||(9622482-9622542)
chr4 (53-137)||(25513820-25513904)
chr4 (53-113)||(55583189-55583249)
chr4 (53-107)||(13847200-13847254)
chr4 (53-130)||(9638986-9639063)
chr4 (54-107)||(12424290-12424343)
chr4 (60-137)||(35660925-35661002)
chr4 (53-137)||(26446176-26446260)
chr4 (25-72)||(10057695-10057742)
chr4 (54-121)||(33186888-33186955)
chr4 (53-120)||(15239815-15239882)
chr4 (135-228)||(35660756-35660860)
chr4 (197-228)||(19434812-19434843)
chr4 (194-228)||(14549518-14549552)
chr4 (53-102)||(15115226-15115275)
chr4 (65-130)||(17142998-17143063)
chr4 (53-137)||(2424386-2424470)
chr4 (54-102)||(11425947-11425995)
chr4 (16-72)||(19243633-19243689)
chr4 (54-102)||(25091657-25091705)
chr4 (54-102)||(53630474-53630522)
[»] scaffold1186 (1 HSPs)
scaffold1186 (53-137)||(1989-2073)
[»] scaffold0515 (1 HSPs)
scaffold0515 (16-84)||(5051-5119)
[»] scaffold0306 (1 HSPs)
scaffold0306 (16-84)||(5051-5119)
[»] scaffold0220 (1 HSPs)
scaffold0220 (53-137)||(13918-14002)
[»] scaffold0058 (1 HSPs)
scaffold0058 (16-84)||(6390-6458)
[»] scaffold0057 (1 HSPs)
scaffold0057 (16-84)||(69815-69883)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-137)||(186195-186279)
[»] scaffold0061 (2 HSPs)
scaffold0061 (53-154)||(14585-14687)
scaffold0061 (53-154)||(23643-23745)
[»] scaffold0878 (1 HSPs)
scaffold0878 (53-137)||(3421-3505)
[»] scaffold0462 (1 HSPs)
scaffold0462 (16-84)||(11245-11313)
[»] scaffold0071 (1 HSPs)
scaffold0071 (16-84)||(15294-15362)
[»] scaffold0056 (1 HSPs)
scaffold0056 (53-137)||(18244-18328)
[»] scaffold0046 (1 HSPs)
scaffold0046 (16-84)||(21739-21807)
[»] scaffold0034 (1 HSPs)
scaffold0034 (16-84)||(29178-29246)
[»] scaffold0577 (1 HSPs)
scaffold0577 (15-72)||(9093-9150)
[»] scaffold0436 (1 HSPs)
scaffold0436 (19-84)||(8982-9047)
[»] scaffold0231 (1 HSPs)
scaffold0231 (53-137)||(17520-17604)
[»] scaffold0083 (1 HSPs)
scaffold0083 (16-84)||(1959-2027)
[»] scaffold0031 (1 HSPs)
scaffold0031 (53-113)||(127342-127402)
[»] scaffold0004 (5 HSPs)
scaffold0004 (53-113)||(75930-75990)
scaffold0004 (53-113)||(111353-111413)
scaffold0004 (54-113)||(73080-73139)
scaffold0004 (43-113)||(66061-66131)
scaffold0004 (194-242)||(66229-66277)
[»] scaffold0555 (1 HSPs)
scaffold0555 (40-119)||(8732-8811)
[»] scaffold0414 (1 HSPs)
scaffold0414 (54-113)||(11160-11219)
[»] scaffold0247 (1 HSPs)
scaffold0247 (54-137)||(1045-1128)
[»] scaffold0632 (1 HSPs)
scaffold0632 (16-102)||(1169-1255)
[»] scaffold0853 (1 HSPs)
scaffold0853 (54-107)||(2454-2507)
[»] scaffold0431 (1 HSPs)
scaffold0431 (54-107)||(5632-5685)
[»] scaffold0379 (1 HSPs)
scaffold0379 (54-115)||(10938-10999)
[»] scaffold0174 (4 HSPs)
scaffold0174 (40-113)||(19849-19922)
scaffold0174 (53-113)||(5447-5507)
scaffold0174 (16-69)||(13674-13727)
scaffold0174 (54-113)||(11609-11668)
[»] scaffold0819 (1 HSPs)
scaffold0819 (16-72)||(5400-5456)
[»] scaffold0594 (2 HSPs)
scaffold0594 (53-113)||(2240-2300)
scaffold0594 (199-228)||(2108-2137)
[»] scaffold0369 (1 HSPs)
scaffold0369 (53-137)||(15615-15698)
[»] scaffold0104 (2 HSPs)
scaffold0104 (16-72)||(14991-15047)
scaffold0104 (16-72)||(17011-17067)
[»] scaffold0086 (1 HSPs)
scaffold0086 (53-113)||(35185-35245)
[»] scaffold0328 (1 HSPs)
scaffold0328 (40-137)||(18626-18724)
[»] scaffold0505 (1 HSPs)
scaffold0505 (54-137)||(4905-4988)
[»] scaffold0156 (1 HSPs)
scaffold0156 (16-72)||(16638-16694)
[»] scaffold0153 (2 HSPs)
scaffold0153 (15-72)||(5331-5390)
scaffold0153 (15-72)||(12351-12410)
[»] scaffold0098 (1 HSPs)
scaffold0098 (53-113)||(40100-40160)
[»] scaffold0048 (1 HSPs)
scaffold0048 (53-113)||(68725-68785)
[»] scaffold0686 (1 HSPs)
scaffold0686 (16-69)||(1475-1528)
[»] scaffold0203 (1 HSPs)
scaffold0203 (40-137)||(17926-18023)
[»] scaffold1256 (1 HSPs)
scaffold1256 (53-137)||(2199-2283)
[»] scaffold0730 (1 HSPs)
scaffold0730 (53-113)||(6504-6564)
[»] scaffold0516 (1 HSPs)
scaffold0516 (53-137)||(5304-5388)
[»] scaffold0148 (1 HSPs)
scaffold0148 (53-111)||(8839-8897)
[»] scaffold0213 (1 HSPs)
scaffold0213 (53-137)||(19176-19260)
[»] scaffold0035 (2 HSPs)
scaffold0035 (53-154)||(43786-43887)
scaffold0035 (53-92)||(39094-39132)
[»] scaffold0108 (1 HSPs)
scaffold0108 (53-115)||(6408-6471)
[»] scaffold0298 (1 HSPs)
scaffold0298 (65-130)||(361-426)
[»] scaffold0205 (1 HSPs)
scaffold0205 (53-102)||(5615-5662)
[»] scaffold0032 (1 HSPs)
scaffold0032 (40-137)||(61834-61930)
[»] scaffold0017 (1 HSPs)
scaffold0017 (57-134)||(26699-26776)
[»] scaffold0149 (2 HSPs)
scaffold0149 (53-84)||(21633-21664)
scaffold0149 (194-228)||(21408-21442)
[»] scaffold1941 (1 HSPs)
scaffold1941 (53-102)||(142-191)
[»] scaffold0112 (1 HSPs)
scaffold0112 (53-102)||(2893-2942)
[»] scaffold0037 (2 HSPs)
scaffold0037 (16-69)||(83033-83086)
scaffold0037 (52-84)||(117805-117837)
[»] scaffold1633 (1 HSPs)
scaffold1633 (54-102)||(1209-1257)
[»] scaffold1283 (1 HSPs)
scaffold1283 (54-102)||(468-516)
[»] scaffold0254 (1 HSPs)
scaffold0254 (16-72)||(21681-21737)
[»] scaffold0162 (1 HSPs)
scaffold0162 (55-87)||(23893-23925)
[»] scaffold0064 (1 HSPs)
scaffold0064 (40-84)||(58768-58812)
[»] scaffold0036 (1 HSPs)
scaffold0036 (54-102)||(78185-78233)
[»] scaffold0019 (1 HSPs)
scaffold0019 (54-102)||(24131-24179)


Alignment Details
Target: scaffold0139 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 23624 - 23229
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaa 115  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23624 gagaaccaagagggaaagagactgccgatcatcaatactaaggtaagggtaggactagctttctctaataatgggttgtataaatctaaaaaggggttaa 23525  T
Q  116 accttgccgttgttgttagtttgaggattagagaaattaaggttagaatttaaaattgaattgttgaaagagtaggtaaaggaaataattggtgttcagg 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||      
T  23524 accttgcagttgttgttagtttgaggattagagaaattaaggttagaatttaaaattgaattgttgaaagagtaggtaaaggtaataatt-gtgttcaaa 23426  T
Q  216 ttgtagaataatcgtagaaagagtttcctataaatttggggtaagggttgtgtactcatgt-ggtagttttgggttttgttttccattgcttttcatgat 314  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  23425 ttgtagaataatcataggaagagtttcctataaatttggggtaagggttgtgtactcatgtgggtagttttgggttttgttttccatcgcttttcatgat 23326  T
Q  315 cttttgataaattcaatgttaaattcatgcaccttgtgctgctgcaattatatgttagatttgtagtctttgaattatgatgatatcataggtatatg 412  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23325 cttttgataaattcaatgttaaattcatgtacc-tgtgctgctgcaattgtatgttagatttgtagtctttgaattatgatgatatcataggtatatg 23229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 248 - 412
Target Start/End: Original strand, 1662 - 1827
Alignment:
Q  248 aatttggggtaagggttgtgtactcatgtgg-tagttttgggttttgttttccattgcttttcatgatcttttgataaattcaatgttaaattcatgcac 346  Q
    |||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||    
T  1662 aatttgggattagggttgtgtactcatgtgggtagtgttgggttttgttttccattgcttttcatgatcctttgataaattcaatgttaaattcgtgtac 1761  T
Q  347 cttgtgctgctgcaattatatgttagatttgtagtctttgaattatgatgatatcataggtatatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1762 cttgtgctgctgcaattatatgttagatttgtagtctttgaattacgatgaaatcataggtatatg 1827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 248 - 412
Target Start/End: Complemental strand, 28709541 - 28709376
Alignment:
Q  248 aatttggggtaagggttgtgtactcatgtgg-tagttttgggttttgttttccattgcttttcatgatcttttgataaattcaatgttaaattcatgcac 346  Q
    |||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||    
T  28709541 aatttgggattagggttgtgtactcatgtgggtagtgttgggttttgttttccattgcttttcatgatcctttgataaattcaatgttaaattcgtgtac 28709442  T
Q  347 cttgtgctgctgcaattatatgttagatttgtagtctttgaattatgatgatatcataggtatatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28709441 cttgtgctgctgcaattatatgttagatttgtagtctttgaattacgatgaaatcataggtatatg 28709376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 18982625 - 18982484
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaa 151  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||||||| |||| ||||| |||||||  ||||||| || |||||| |||||||||||    
T  18982625 ctaaggtaacggtgggattaactttatctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgctaggtttgatgattagagaaa 18982526  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| |||||||| |||||||||| ||| |||||||||||||||    
T  18982525 ttagggttagaa-ttaaaattgatttggtgaaagagtaggtaa 18982484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15173415 - 15173483
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  15173415 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaatggtgggactaactttctctaat 15173483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27329942 - 27330029
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||  | ||||||||||||||    
T  27329942 agagaacccagagggagagagaccgccgatcatcaatactaaggtaagagtgtgactaactttctctaattctaggttgtataattct 27330029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27390682 - 27390769
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||  | ||||||||||||||    
T  27390682 agagaacccagagggagagagaccgccgatcatcaatactaaggtaagagtgtgactaactttctctaattctaggttgtataattct 27390769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 10446270 - 10446210
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10446270 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 10446210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 28103411 - 28103466
Alignment:
Q  17 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28103411 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 28103466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 21683074 - 21683152
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||||  ||||||||    
T  21683074 ctaaggtaagggtgggactagctttctctaataatgggttgtataattcagaaaaagggtttaaccttgtagttgttgt 21683152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 19825472 - 19825569
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||||||||| |||||||| |||| || || |||||||  ||||||||||||||    
T  19825472 ccgatcatctaatctaaggtaagggtgagactagctttctctaataatgggttgcataattctgaaaaaggttttaaccttgtagttgttgttagttt 19825569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15900616 - 15900684
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||    
T  15900616 gagaaccaagagggagagagaccgccgatcttcaatactaaggtaagggtgagaccaactttctctaat 15900684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27852296 - 27852240
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27852296 gagaaccaagagggagagagaccgctgatcatcaatactaaggtaagggtgggacta 27852240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 20733206 - 20733262
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  20733206 gagaaccaagagggagagagaccgctgatcatcaatactaaggtaagggtgagacta 20733262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 23658142 - 23658074
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| |||||||    
T  23658142 ctaaggtaagggtgggactagctttccctaataataggttgtataattctgaaaaagggtttaaccttg 23658074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 20410512 - 20410595
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||| || || |||||||  |||||| |||||||    
T  20410512 taaggtaagggtggaaatagctttctctaataatgggttgtataattctgaaaaaggatttaaccttgtagttgttattagttt 20410595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 29045334 - 29045264
Alignment:
Q  43 atcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||    
T  29045334 atcatctattctaaggtaagggtgagactagctttctctaataatgggttgtataattttgaaaaagggtt 29045264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 25921903 - 25921832
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctataaatttggggtaagggttg 265  Q
    |||| ||| |||||||||||||||||||||||||| ||| || ||||| |||||||||| |||| |||||||    
T  25921903 aaggtaatgattggtgttcaggttgtagaataatcataggaaaagttttctataaattttgggttagggttg 25921832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 15998942 - 15998858
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||| |||||||||||  |  ||||||||||||| |||| | ||| |||||||  ||||||||||||||    
T  15998942 ctaaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagagtttaaccttgtagttgttgttagttt 15998858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 34140455 - 34140537
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| | |||   |||| || ||||  ||||||||||||||    
T  34140455 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattttgaaatctggtttaatcttgtagttgttgttagttt 34140537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 34153071 - 34153109
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggtt 92  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  34153071 ctaaggtaagggtgggactagc-ttctctaataatgggtt 34153109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 29045166 - 29045104
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat-aaatttggg 255  Q
    |||| |||||||| ||||||||||||||||||||| |||  ||||||| |||| |||||||||    
T  29045166 aaggtaataattgatgttcaggttgtagaataatcataggtagagttttctatcaaatttggg 29045104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 15890711 - 15890760
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  15890711 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 15890760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 7828024 - 7827976
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  7828024 taaggtaagggtgggactaactttctctaattctaagttgtataattct 7827976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 13285801 - 13285741
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| | |||| |||| ||| |||  |||||||| ||||||||||    
T  13285801 ctaaggtaagggtgggactaaccttctataatcatgagtttcataattctgaaaaggggtt 13285741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 23150287 - 23150335
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  23150287 taaggtaagggtgggactaactttctctaattctaagttgtataattct 23150335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 277 - 412
Target Start/End: Original strand, 11391141 - 11391276
Alignment:
Q  277 ggtagttttgggttttgttttccattgcttttcatgatcttttgataaattcaatgttaaattcatgcaccttgtgctgctgcaattatatgttagattt 376  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  11391141 ggtagtgttgggttttgttttccattgcttttcatgatcctttgataaattcaatgttaaattcgtgtaccttgtgctgctgcaattatatgttagattt 11391240  T
Q  377 gtagtctttgaattatgatgatatcataggtatatg 412  Q
    ||||||||||||||| ||||| ||||||||||||||    
T  11391241 gtagtctttgaattacgatgaaatcataggtatatg 11391276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 58399 - 58472
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  58399 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 58472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 19195677 - 19195581
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  19195677 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaa-gggtttaaccttgtagttgttgttagttt 19195581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 708428 - 708512
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  |||| |||||||||    
T  708428 ctaaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgctgttagttt 708512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 8513752 - 8513820
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8513752 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttg 8513820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 15575648 - 15575732
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||   |||||||||||||    
T  15575648 ctaaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtacttgttgttagttt 15575732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 16549967 - 16550035
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  16549967 gagaaccaagagggagagagactgccgatcatcaatactaaggtaaggttgggactaactttctctaat 16550035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 16615695 - 16615627
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  16615695 gagaaccaagagggagagagactgccgatcatcaatactaaggtaaggttgggactaactttctctaat 16615627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 19485935 - 19485991
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19485935 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 19485991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 43745709 - 43745625
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||| |||||||  ||||||||||||||    
T  43745709 ctaaggtaagggtgggactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttgttgttagttt 43745625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 8488093 - 8488160
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaacctt 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  8488093 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaacctt 8488160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 33556104 - 33556244
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaac--cttgccgttgttgttagtttgaggattagagaa 150  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||   |||  ||| |||||||||||| | ||| ||||    
T  33556104 ctaagataagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgtt-ttgttagtttgatg-ttatagaa 33556201  T
Q  151 attaaggttagaatttaaaattgaattgttgaaagagtaggtaaa 195  Q
    |||| ||||  |||| |||| |  |||||||||||||||||||||    
T  33556202 attagggtt--aattgaaaaattgattgttgaaagagtaggtaaa 33556244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 30820112 - 30820169
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30820112 agagaaccaagagggagagagaccgccgatcatcaatactaaggtgagggtgggacta 30820169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 47095505 - 47095424
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||| |||||||  |||||||||||    
T  47095505 ctaaggtaagggtgggactagctttctctaataatgggttgaataattctgaaaaatggtttaaccttgtagttgttgttag 47095424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 13744509 - 13744569
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  13744509 ctaaggtaagggtgggactagctttctctaataatgggttttatgattctaaaaaggggtt 13744569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29052144 - 29052212
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  29052144 gagaactaagagggagagaaaccgtcgatcatcaatactaaggtaagggtgggactaactttctctaat 29052212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 38299801 - 38299741
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  38299801 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtt 38299741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 18874664 - 18874734
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct--aaaaaggggttaaaccttg 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  18874664 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaaaggggtttaaccttg 18874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 46579720 - 46579774
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46579720 agagaaccaatagggagagagaccgccgatcatcaatactaaggtaagggtggga 46579774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 8930764 - 8930824
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  8930764 ctaaggtaagggtgggactacatttctctaataatgggttgtatgattctaaaaaggggtt 8930824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 20252181 - 20252265
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||| ||| |||  |||||| |||||||    
T  20252181 ctaaggtaagggtaggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttattagttt 20252265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 36300640 - 36300700
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  36300640 ctaaggtaaaggtgagactagctttctctaataatgggttgtatgattctaaaaaggggtt 36300700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 13315081 - 13315293
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtt-agtttgaggattagagaaa 151  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| || | ||  ||| ||||| | |||||   || ||||||    
T  13315081 ctaaggtaagggtgagactatctttctctaataatgggttgtatgattctgaaaaggggtttaa-catgttgtt-ttgttaattttgattgtt-gagaaa 13315177  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggta------------aaggaaataattggtgttcaggttgtagaataatcgtagaaagagt 239  Q
    ||| | || ||| ||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||||||| |||  |||||    
T  13315178 ttaggttttgaaattaaaattg-attgttgaaagagtaggtaacccaatgaattaaggaaataattggtgttcaggttgtagaataatcataggtagagt 13315276  T
Q  240 ttcctat-aaatttggg 255  Q
    || |||| |||||||||    
T  13315277 tttctatcaaatttggg 13315293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 15720831 - 15720772
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  15720831 taaggtaaaggtgggactagctttctctcataatgggttgtatgattctaaaaaggggtt 15720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 43276744 - 43276797
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  43276744 taaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaa 43276797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 18570700 - 18570640
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||    
T  18570700 ctaaggtaagggtgagactagctttctctaataatgggttgtaagattctagaaaggggtt 18570640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 25943319 - 25943260
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||    
T  25943319 taaggtaagggtgggactagctttctctaataatgggttgtatgtttttgaaaaggggtt 25943260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 36685108 - 36685159
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgg 67  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  36685108 gagaaccaagagggagagagaccgttgatcatcaatactaaggtaagggtgg 36685159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 3287797 - 3287743
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  3287797 ctaaggtaagggtgagactagctttctctaataataggttgtataattctgaaaa 3287743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 15700734 - 15700873
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagtttgaggattagagaaat 152  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||  ||||||||||||||| || | ||  |||||||||||||| |   ||| ||||||    
T  15700734 ctaaggtaaggatgatactagctttctctaataatgggttgtatggttctaaaaaggggtttaa-catgtagttgttgttagttttaatgttatagaaat 15700832  T
Q  153 taaggttagaatttaaaattgaattgttgaaagagtaggtaaa 195  Q
    || ||||| | |  |||||||  ||||||||||||||||||||    
T  15700833 tagggtta-attgcaaaattg-gttgttgaaagagtaggtaaa 15700873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 16250221 - 16250281
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||| | |||| |||||    
T  16250221 ctaaggtaagggtgggactaactttctctaataatgagttgtataattttgaaaaagggtt 16250281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 15700887 - 15700942
Alignment:
Q  58 gtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  15700887 gtaagggggagactagctttctctaataatgagttgtatgattctaaaaaggggtt 15700942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 48212726 - 48212812
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct--aaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||| |||||| |||||||| |||||  ||||||||||| ||| |||   |||||||||||||    
T  48212726 ctaaggtaagggtgtgactagctttctccaataataggttgtatgattctaaaaaaaggggtttaacattgtaattgttgttagttt 48212812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 19283108 - 19283050
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct-aaaaagggg 111  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||    
T  19283108 taaggtaagggtgagactaactttctctaagaatgggttgtataattctgaaaaagggg 19283050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 4690662 - 4690730
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    ||||||||| |||||||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||    
T  4690662 ctaaggtaaaggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttg 4690730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 38295504 - 38295452
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat 246  Q
    |||| ||||||||||||||||| |||||||||||| |||  ||||||||||||    
T  38295504 aaggtaataattggtgttcaggatgtagaataatcataggtagagtttcctat 38295452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 47975041 - 47975080
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtaga 233  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  47975041 aaggtaataattggtgttcaggttgtagaataatcataga 47975080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 12127149 - 12127211
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  12127149 ccgatcatctaatctaaggtaagggtgggactaactttctctaattctaagttgtataattct 12127211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 831861 - 831926
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    ||||||||| |||||||||  |||||||||| ||||||||||| ||||| ||| |||  |||||||    
T  831861 tgggactagttttctctaaagatgggttgtacaattctaaaaaagggtttaacattgtagttgttg 831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 1197041 - 1197106
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    ||||||||| |||||||||  |||||||||| ||||||||||| ||||| ||| |||  |||||||    
T  1197041 tgggactagttttctctaaagatgggttgtacaattctaaaaaagggtttaacattgtagttgttg 1197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 12754820 - 12754849
Alignment:
Q  199 aataattggtgttcaggttgtagaataatc 228  Q
    ||||||||||||||||||||||||||||||    
T  12754820 aataattggtgttcaggttgtagaataatc 12754849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 19282948 - 19282887
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat-aaatttgg 254  Q
    |||| |||||||||| ||||||||||||||||||| |||  ||||||| |||| ||||||||    
T  19282948 aaggtaataattggtcttcaggttgtagaataatcataggtagagttttctatcaaatttgg 19282887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20214200 - 20214151
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| ||||||| |||  || |||||||||||||    
T  20214200 ctaaggtaagggtgggactaactttctcaaattctgagttgtataattct 20214151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20586405 - 20586356
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  20586405 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 20586356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 8851159 - 8851207
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  8851159 taaggtaagggtgggactaactttctctaattctaagttgtataattct 8851207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 12372326 - 12372278
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  12372326 taaggtaagggtgggactaactttctctaattctaagttgtataattct 12372278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 12465260 - 12465308
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  12465260 taaggtaagggtgggactaactttctctaattctaagttgtataattct 12465308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 13147458 - 13147502
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||| | | ||||||||||||||||||| |||||||||||    
T  13147458 ccgatcatctaaattaaggtaagggtgggactaactttctctaat 13147502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 277 - 412
Target Start/End: Complemental strand, 5842818 - 5842683
Alignment:
Q  277 ggtagttttgggttttgttttccattgcttttcatgatcttttgataaattcaatgttaaattcatgcaccttgtgctgctgcaattatatgttagattt 376  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  5842818 ggtagtgttgggttttgttttccattgcttttcatgatcctttgataaattcaatgttaaattcgtgtaccttgtgctgctgcaattatatgttagattt 5842719  T
Q  377 gtagtctttgaattatgatgatatcataggtatatg 412  Q
    ||||||||||||||| ||||| ||||||||||||||    
T  5842718 gtagtctttgaattacgatgaaatcataggtatatg 5842683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 29907692 - 29907550
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaa 151  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| |||||||  |||||||||| |||||| |||||||||||    
T  29907692 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaa 29907593  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| |||||||| ||||||||||||||||||||| ||||||||    
T  29907592 ttagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29907550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 29948858 - 29948716
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaa 151  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| |||||||  |||||||||| |||||| |||||||||||    
T  29948858 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaa 29948759  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| |||||||| ||||||||||||||||||||| ||||||||    
T  29948758 ttagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29948716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 29998012 - 29997870
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaa 151  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| |||||||  |||||||||| |||||| |||||||||||    
T  29998012 ctaaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaa 29997913  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| |||||||| ||||||||||||||||||||| ||||||||    
T  29997912 ttagggttagaaattaaaattgaattgttgaaagtgtaggtaa 29997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 14641534 - 14641629
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagt 135  Q
    ||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||    
T  14641534 ccgatcatctaatctaaggtaagggtgggattagctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttgttagt 14641629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 24177698 - 24177784
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| ||  |||||||||||||    
T  24177698 gagaaccaagagggagagagaccgccgattatcaatactaaggtaagggtgggacaaactttctctaattataagttgtataattct 24177784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 14520499 - 14520415
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||||||  ||||||||||||||    
T  14520499 ctaaggtaagggtgggactagctttctttaataatgggttgtataattctaaaaaaaggtttaaccttgtagttgttgttagttt 14520415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 36528956 - 36528889
Alignment:
Q  17 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  36528956 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggattaactttctctaat 36528889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15446830 - 15446898
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  15446830 gagaaccaagagggagagagatcgccgatcatcattactaaggtaagggtgggactaactttctctaat 15446898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 17208577 - 17208493
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || || |||||||  ||||||||||||||    
T  17208577 ctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaaggatttaaccttgtagttgttgttagttt 17208493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37641466 - 37641522
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37641466 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 37641522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 54875474 - 54875533
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54875474 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 54875533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 16980003 - 16979934
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  16980003 agagaaccaagagagagagagaccgtcgatcatcaatactaaggtaagggtgggactaactttctttaat 16979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 3527156 - 3527216
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  3527156 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattttaaaaaggggtt 3527216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 3263926 - 3263993
Alignment:
Q  17 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||    
T  3263926 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtcggattaaccttctctaat 3263993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 6156763 - 6156701
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  6156763 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaggggtttaa 6156701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 6159471 - 6159398
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| |  |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  6159471 ccgatcatctaatctaaggtaagggtgagactcgctttctctaataatgggttgtatgattctaaaaaggggtt 6159398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 52988819 - 52988876
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  52988819 agagaaccaagagggagagagaccgcagatcatcaatactaaggtaagggtgagacta 52988876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 2841505 - 2841565
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  2841505 ctaaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaagaggtt 2841565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 14152398 - 14152466
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||| |||||||    
T  14152398 ctaaggtaagggtgggactagctttctctaataatgagttgtatcattctgaaaaagggtttaaccttg 14152466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 14442228 - 14442168
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  14442228 ctaaggtaagggtgggactagctttctgtaataatgggttgtatgattctaaaaagcggtt 14442168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 22841278 - 22841338
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22841278 ctaatgtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtt 22841338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 17669698 - 17669757
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17669698 taaggtaatgatgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 17669757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 17684835 - 17684894
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  17684835 taaggtaagggtgggactagttttctgtaataatgggttgtatgattctaaaaaggggtt 17684894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 31223813 - 31223864
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtg 66  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31223813 agagaaccaagagggagagagaccaccgatcatcaatactaaggtaagggtg 31223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 14967268 - 14967218
Alignment:
Q  22 caagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14967268 caagagggagagagaccgccgatcatcaatactaaggtaagggggggacta 14967218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 12917305 - 12917365
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  12917305 ctaagataagggtgggactaactttctctaataatgggttgtatgattctaaaaaagggtt 12917365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 45803338 - 45803390
Alignment:
Q  61 agggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  45803338 agggtgggactagctttctctaataatgggttgtataattctgaaaaagggtt 45803390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 5215699 - 5215632
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| | |||| ||||| |||||||    
T  5215699 taaggtaagggtggcactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttg 5215632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 24547253 - 24547197
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaagg 109  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||    
T  24547253 ctaaggtaaggatgagactatctttctctaataatgggttgtatgattctaaaaagg 24547197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 24548953 - 24549013
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||    
T  24548953 ctaaagtaagggtgagactaactttatctaataatgggttgtatgattctaaaaaggggtt 24549013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 52465345 - 52465389
Alignment:
Q  28 ggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  52465345 ggagagagaccgccgatcatcaatactaaggtaagggtgtgacta 52465389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 50755266 - 50755313
Alignment:
Q  66 gggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  50755266 gggactaactttctctaataatggattgtatgattctaaaaaggggtt 50755313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 2247877 - 2247942
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    |||||||||||||||||||  ||||||||||||||||| |||| ||||| ||| |||  |||||||    
T  2247877 tgggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 2247942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1864329 - 1864385
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| ||||||  |||||||||||  || ||||||||||||||||||||    
T  1864329 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgggacta 1864385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 12917463 - 12917515
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat 246  Q
    |||| |||||||||||||||||||||| ||||||| |||  ||||||||||||    
T  12917463 aaggtaataattggtgttcaggttgtaaaataatcataggtagagtttcctat 12917515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 15566797 - 15566729
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    |||| ||||||||||||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||    
T  15566797 ctaaagtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttg 15566729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44495628 - 44495570
Alignment:
Q  16 gagaaccaagagggagagaga--ccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| ||||||||  |||||||||||  || ||||||||||||||||||||    
T  44495628 gagaaccaagagagagagagaagccgccgatcattcattctaaggtaagggtgggacta 44495570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 6805077 - 6805111
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatc 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  6805077 aaggtaataattggtgttcaggttgtagaataatc 6805111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 40808049 - 40808000
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  40808049 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 40808000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 44274471 - 44274422
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  44274471 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 44274422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 17045018 - 17044970
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  17045018 taaggtaagggtgggactaactttctctaattctaagttgtataattct 17044970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 17047178 - 17047130
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  17047178 taaggtaagggtgggactaactttctctaattctaagttgtataattct 17047130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 17541486 - 17541438
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  17541486 taaggtaagggtgggactaactttctctaattctaagttgtataattct 17541438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 22306583 - 22306631
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  22306583 taaggtaagggtgggactaactttctctaattctaagttgtataattct 22306631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 25202187 - 25202086
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtt--agtttgaggattagagaa 150  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||| ||| |||  ||||| ||| | |  |||||||||  | ||||| ||||||||||    
T  25202187 ctaaggtaagggtgggactagc-ttcgctaataatgggtt-tataaatctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 25202090  T
Q  151 atta 154  Q
    ||||    
T  25202089 atta 25202086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 22145666 - 22145807
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaat 152  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| |||||||  |||||||||| |||||||||||||| ||||    
T  22145666 taaggtaagggtgggactaactttctctaataatgggttgtttaattctgaaaaagggtttaaccttgtagttgttgttaggtttgaggattagataaat 22145765  T
Q  153 taaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  22145766 taaggttagaaattaaaattgaattgttgaaggagtaggtaa 22145807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 8306672 - 8306518
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaac--cttgccgttgttgttag-tt 136  Q
    ||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||| |||| ||||||| ||    
T  8306672 ccgatcatctaatctaaggtaagagtgggactagctttctctaataatgggttgtataattctaaaaaggggtttaacatgttgtcgtt-ttgttagttt 8306574  T
Q  137 tgaggattagagaaattaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| | ||| |||||||| |||| ||| ||||||||| ||||||||||||||||||||    
T  8306573 tgatg-ttatagaaattagggtttgaaattaaaattg-attgttgaaagagtaggtaa 8306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 24007187 - 24007308
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct-aaaaaggggtta 114  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || |||    
T  24007187 gagaaccaagagggagagagaccgtcgatcatctatactaaggtaagggtgggactagctttctctgataat-gattgtataattctgaaaaaaggttta 24007285  T
Q  115 aaccttgccgttgttgttagttt 137  Q
    | | |||  ||||||||||||||    
T  24007286 acctttgtagttgttgttagttt 24007308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 51336570 - 51336501
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51336570 agagaaccaagagggagggagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 51336501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 12327705 - 12327773
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12327705 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgagactaactttctctaat 12327773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29763594 - 29763662
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  29763594 gagaaccaagagggagagagaccgacgatcatcaatactaaggtaagggtgggactaactttctctaat 29763662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 38056671 - 38056755
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  38056671 ctaaggtaagggtgggactagctttctctagtaatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 38056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 50544925 - 50544841
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  50544925 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 50544841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 28476733 - 28476817
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  28476733 ctaaggtaagggtgggactagatttctctaataatgagttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 28476817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 46197707 - 46197775
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  46197707 gagaaccaagagggagagagactgtcgatcatcaatactaaggtaagggtgggactaactttctctaat 46197775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 50001567 - 50001498
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  50001567 agagaatcaaaagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctttaat 50001498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 21995626 - 21995682
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21995626 gagaaccaagagggagagagaccgccgatcatcaatactaagataagggtgggacta 21995682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 34392821 - 34392761
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  34392821 ctaaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaaggggtt 34392761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 12710920 - 12710811
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag-tttgaggattagagaaa 151  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||||||| |||| ||||| || ||||  ||||||||||| ||||| | ||| |||||    
T  12710920 ctaaggtaaagatgggactagctttctctaatattgggttgtataattctgaaaaagggtttaatcttgtagttgttgttagttttgatg-ttatagaaa 12710822  T
Q  152 ttaaggttaga 162  Q
    |||||||||||    
T  12710821 ttaaggttaga 12710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 17901783 - 17901853
Alignment:
Q  43 atcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  17901783 atcatctattctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtt 17901853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 635003 - 635063
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  635003 ctaaggtaagggtgagactagctttctctaataataggttgtataattctaaaaaagggtt 635063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 24719514 - 24719593
Alignment:
Q  57 ggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||||||  |||||| |||||||    
T  24719514 ggtaagggtgg-actagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttt 24719593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 45499595 - 45499535
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  45499595 ctaaggtaagggtgagactagctttctctaataatgggttgtatgattctataaaggggtt 45499535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20588690 - 20588637
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  20588690 taaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaa 20588637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20593228 - 20593175
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  20593228 taaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaa 20593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 8275988 - 8276065
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    |||||||||||||| |||||||||| |||||||||| || |||||||||| |||| ||||| |||||||  |||||||    
T  8275988 ctaaggtaagggtgtgactagctttatctaataatgagtggtataattctgaaaaagggtttaaccttgtagttgttg 8276065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 6834239 - 6834169
Alignment:
Q  43 atcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||| || |||||| |||||||  |||||||||||||||||||| ||||||||||||| |||| |||||    
T  6834239 atcatctattctaaggcaagggtgatactagctttctctaataatgagttgtataattctgaaaaagggtt 6834169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 7703175 - 7703140
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatg 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  7703175 ctaaggtaagggtgggactagctttctctaataatg 7703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 6834068 - 6834006
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat-aaatttggg 255  Q
    |||| |||||||||||||||||||||||||||||| |||  ||||||| |||| |||||||||    
T  6834068 aaggtaataattggtgttcaggttgtagaataatcataggtagagttttctatcaaatttggg 6834006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 17901952 - 17902014
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat-aaatttggg 255  Q
    |||| |||||||||||||||||||||||||||||| |||  ||||||| |||| |||||||||    
T  17901952 aaggtaataattggtgttcaggttgtagaataatcataggtagagttttctatcaaatttggg 17902014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 35895152 - 35895098
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    |||||||| |||| ||||||||||| |||||||||||||||||| ||||| ||||    
T  35895152 ctaaggtatgggtaggactagctttatctaataatgggttgtatgattctgaaaa 35895098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 23592906 - 23592962
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| ||||||  |||||||||||  || ||||||||||||||||||||    
T  23592906 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgggacta 23592962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 24723610 - 24723644
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatc 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  24723610 aaggtaataattggtgttcaggttgtagaataatc 24723644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 21168986 - 21168933
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaa 106  Q
    ||||||||||||||| | || |||||||||||  | ||||||||||||||||||    
T  21168986 ctaaggtaagggtggaattaactttctctaattttaggttgtataattctaaaa 21168933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 21243892 - 21243921
Alignment:
Q  199 aataattggtgttcaggttgtagaataatc 228  Q
    ||||||||||||||||||||||||||||||    
T  21243892 aataattggtgttcaggttgtagaataatc 21243921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 27652352 - 27652412
Alignment:
Q  16 gagaaccaagagggagagaga--ccgccgatcatcaatactaaggtaagggtgggactagc 74  Q
    |||||||||||| ||||||||  | |||||||||| || |||||||||||||| |||||||    
T  27652352 gagaaccaagagagagagagaagctgccgatcatccattctaaggtaagggtgagactagc 27652412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 16401963 - 16401917
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16401963 taaggtaagggtgggactaac-ttctctaataatgggtt-tataattct 16401917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 19676763 - 19676715
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  19676763 taaggtaagggtgggactaactttctctaattctaagttgtataattct 19676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 21046049 - 21046097
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  21046049 taaggtaagggtgggactaactttctctaattctaagttgtataattct 21046097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 21239193 - 21239245
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctat 246  Q
    |||| |||||||||||||||| ||||||||||||| |||  ||||||| ||||    
T  21239193 aaggtaataattggtgttcagtttgtagaataatcataggtagagttttctat 21239245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 41373460 - 41373404
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||  |||||  |||||||||||  || ||||||||||||||||||||    
T  41373460 gagaaccaagagatagagaagccgccgatcattcattctaaggtaagggtgggacta 41373404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 16418 - 16560
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtta-gtttgaggattagagaaa 151  Q
    |||||||||||||| || || |||| |||||||||||||||||||||||| |||| ||||| |||||||  |||||||||| |||||| |||||||||||    
T  16418 ctaaggtaagggtgagattaactttatctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaa 16517  T
Q  152 ttaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    ||| |||||||  |||||||||| |||||||||||||||||||    
T  16518 ttagggttagagattaaaattgatttgttgaaagagtaggtaa 16560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 18700 - 18843
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagtt--tgaggattagagaa 150  Q
    ||||||| ||||||||| || ||||||||||||||| ||||||||||||| ||||  |||| | |||||  ||||||||||| |  ||| ||||||||||    
T  18700 ctaaggtgagggtgggattaactttctctaataatgagttgtataattcttaaaaacggtttagccttgtagttgttgttaggtcatgatgattagagaa 18799  T
Q  151 attaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
    |||| |||||||  |||||||||| |||||||||||||||||||    
T  18800 attagggttagagattaaaattgatttgttgaaagagtaggtaa 18843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 34491201 - 34491299
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctct-aataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||| |||| |||||    
T  34491201 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagc-ttctctaaataacgagttgtataattctgaaaaagggtt 34491299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 357971 - 357903
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  357971 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 21080934 - 21080999
Alignment:
Q  19 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21080934 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 21080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 21315475 - 21315559
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  |||||| |||||||    
T  21315475 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttt 21315559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 21335265 - 21335349
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  |||||| |||||||    
T  21335265 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttt 21335349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21915714 - 21915646
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  21915714 gagaaccaagagggagagagaccgccgatcatcaatactaaagtaagggtgtgactaactttctctaat 21915646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 23801549 - 23801489
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23801549 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 23801489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 40912410 - 40912324
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  40912410 gagaaccaagagagagagagacaaccgatcatcaatactaaggtaagggtgggactaactttctctaattctaagttgtataattct 40912324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34858157 - 34858210
Alignment:
Q  19 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34858157 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 34858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34873219 - 34873272
Alignment:
Q  19 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34873219 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 34873272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 25184279 - 25184211
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  25184279 gagaacgaagagggagagagaccgccaatcatcaatactaaggtaagggtgagactaactttctctaat 25184211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 149487 - 149644
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct---aaaaaggggttaaac--cttgccgttgttgttag 134  Q
    ||||||||| |  ||||||||||||||| |||||||||||||||||||| |||||||||||||   ||||||||||| |||   ||| |||| |||||||    
T  149487 ccgatcatctaatctaaggtaagggtggaactagctttctctaataatgagttgtataattctaaaaaaaaggggtttaacatgttgtcgtt-ttgttag 149585  T
Q  135 -tttgaggattagagaaattaaggttagaatttaaaattgaattgttgaaagagtaggtaa 194  Q
     ||||| | ||| |||||||| |||| ||| ||||||||| ||||||||||||||||||||    
T  149586 ttttgatg-ttatagaaattagggtttgaaattaaaattg-attgttgaaagagtaggtaa 149644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 21369359 - 21369278
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    ||||||||| |  |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||| |||||||    
T  21369359 ccgatcatctaatctaaggtaagggtgggacaagctttctctaacaatgggttgtataattctgaaaaagggtttaaccttg 21369278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 23610679 - 23610595
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||| ||||||   ||||||||| ||||    
T  23610679 ctaaggtaagggtgggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttctagttgttgtttgttt 23610595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 27484451 - 27484514
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttct 79  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||    
T  27484451 gagaaccaagagggagagataccaccgatcatcaatactaaggtaagggtgagactaactttct 27484514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 28344987 - 28345047
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  28344987 ctaagataagggtgtgactagctttctctaataatgggctgtatgattctaaaaaggggtt 28345047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 18240868 - 18240824
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggt 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  18240868 agagaaccaagagggagagagaccgtcgatcatcaatactaaggt 18240824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 14183621 - 14183677
Alignment:
Q  199 aataattggtgttcaggttgtagaataatcgtagaaagagtttcctat-aaatttgg 254  Q
    ||||||||||||||||||||| |||||||| |||  |||||||||||| ||||||||    
T  14183621 aataattggtgttcaggttgtggaataatcataggtagagtttcctatcaaatttgg 14183677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 36734450 - 36734551
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtt--agtttgaggattagagaa 150  Q
    ||||||||||||||||| || | ||||||||||||||||| |||||||||||||  ||||| ||| | |  |||||||||  | ||||| ||||||||||    
T  36734450 ctaaggtaagggtgggattaac-ttctctaataatgggtt-tataattctaaaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 36734547  T
Q  151 atta 154  Q
    ||||    
T  36734548 atta 36734551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 28652701 - 28652756
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttcctataaa 249  Q
    |||| |||||||| ||||||||| ||||||||||| ||| |||||||| |||||||    
T  28652701 aaggtaataattgatgttcaggtagtagaataatcataggaagagttttctataaa 28652756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 17307552 - 17307490
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  17307552 ccgatcatctaatctaaggtaagggtgggactaactttctctaattctaagttgtataattct 17307490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 24516239 - 24516190
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  24516239 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 24516190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 29602178 - 29602117
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagcttt 77  Q
    |||||||||||| ||||||  |||||||||||  || |||||||||||||| ||||| ||||    
T  29602178 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgagactaacttt 29602117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 2523747 - 2523795
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  2523747 taaggtaagggtgggactaactttctctaattctaagttgtataattct 2523795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 5031129 - 5031177
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  5031129 taaggtaagggtgggactaactttctctaattctaagttgtataattct 5031177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 22502037 - 22501993
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||    
T  22502037 ccgatcatctaatctaaggtaagggtgggactaactttctctaat 22501993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 22509971 - 22509927
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||    
T  22509971 ccgatcatctaatctaaggtaagggtgggactaactttctctaat 22509927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 24780840 - 24780888
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  24780840 taaggtaagggtgggactaactttctctaattctaagttgtataattct 24780888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 2934 - 2850
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  2934 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 2850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21187 - 21119
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21187 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 21119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 34202 - 34134
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34202 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 34134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 19880912 - 19880844
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19880912 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 19880844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23479172 - 23479104
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23479172 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 23479104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 12577970 - 12577866
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtta 114  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||  |||| |||||     
T  12577970 agagaatcaagagggagagagactgctgatcatcaatactaaggtaagggtgggactaactttctctaataat-agttgtataattccgaaaaagggttt 12577872  T
Q  115 aacctt 120  Q
    ||||||    
T  12577871 aacctt 12577866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 18816295 - 18816378
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  18816295 taaggtaagggtgggactagctttctctaaaaatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 18816378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 22208335 - 22208254
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  22208335 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttg 22208254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 17158925 - 17158993
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  17158925 gagaaccaagggggagagagaccaccgatcatcaatactaaggtaagggtgggactaactttctctaat 17158993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 21399770 - 21399710
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21399770 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 21399710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 21794263 - 21794203
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21794263 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 21794203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 26454798 - 26454730
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  26454798 gagaaccaagagggagaaagatcgccgatcatcaatactaaggtaagggtgggactaactttctctaat 26454730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 36732411 - 36732495
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||| |||||||  ||||||||||||||    
T  36732411 ctaaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagagtttaaccttgtagttgttgttagttt 36732495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 21514743 - 21514660
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  21514743 taaggtaagggtgggactagatttctctaataatgagttgtataattcttaaaaagggtttaaccttgtagttgttgttagttt 21514660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 16198926 - 16198858
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||    
T  16198926 gagaaccaagagggagagagaccaccgatcatcaatactaaggtaaaagtgggactaactttctctaat 16198858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 22258306 - 22258382
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |||||||    
T  22258306 taaggtaagggtgagactagctttctctaataatgagttgtataattccaaaaaagggtttaaccttgcagttgttg 22258382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 41680095 - 41680151
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41680095 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaaaggtgggacta 41680151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 22237011 - 22237065
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22237011 agagaaccaagaaggagagagaccgccgatcatcaatactaaggtaagggtggga 22237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 22345217 - 22345157
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  22345217 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggggtt 22345157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 22356877 - 22356817
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  22356877 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggggtt 22356817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 22610266 - 22610326
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  22610266 ctaaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaaggggtt 22610326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 22483834 - 22483779
Alignment:
Q  58 gtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtt 22483779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 18834474 - 18834413
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaa 115  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||    
T  18834474 taaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaggggtttaa 18834413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 4380616 - 4380700
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  4380616 ctaaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 4380700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 23884222 - 23884164
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  23884222 ctaaggtaagggcgggactagctttctcta--aatgggttgtatgattctaaaaaggggtt 23884164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 18023567 - 18023632
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    |||||||||||||||||||  ||||||||||||||||| |||| ||||| ||| |||  |||||||    
T  18023567 tgggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 18023632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 21676499 - 21676581
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| | |||  ||||| ||| |||  ||||||| ||||||    
T  21676499 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgatagttt 21676581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 21676592 - 21676674
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| | |||  ||||| ||| |||  ||||||| ||||||    
T  21676592 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgatagttt 21676674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 21678845 - 21678927
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| | |||  ||||| ||| |||  ||||||| ||||||    
T  21678845 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgatagttt 21678927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 22483990 - 22483931
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||| | ||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  22483990 ctaaggtaagcg-gggactaactttctctaataatgagttgtataattcttaaaaagggtt 22483931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 38184923 - 38184971
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  38184923 tgggactagctttctctaaagatgggttgtataattctgaaaaagggtt 38184971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 23661385 - 23661330
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggact 71  Q
    |||||||||||| ||||||  |||||||||||  || |||||||||||||||||||    
T  23661385 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgggact 23661330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 36306063 - 36305997
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||  |||||||| ||||| ||||    
T  36306063 ccgatcatctaatctaaggtaagggtgagactagctttctctaataa-cggttgtatgattctgaaaa 36305997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 20022026 - 20022070
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||    
T  20022026 ccgatcatctaatctaaggtaagggtgggactaactttctctaat 20022070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 16063804 - 16063720
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  16063804 ctaaggtaagggtgggactacctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttgttagttt 16063720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 17011818 - 17011750
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17011818 gagaaccaagaaggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 17011750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 31457050 - 31456982
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  31457050 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgagactaactttctctaat 31456982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 10774626 - 10774682
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10774626 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 10774682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 18744927 - 18744843
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||  |||||| |||||||    
T  18744927 ctaaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttt 18744843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 32607315 - 32607375
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32607315 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 32607375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 21554264 - 21554321
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21554264 agagaaccaagagggagagagaccgctgatcatcaatactaaggtaagggtgggacta 21554321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 21556910 - 21556967
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21556910 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgagacta 21556967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 30616704 - 30616636
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||    
T  30616704 gagaaccaagagggagagagaccgccgatcatcaatattatggtaagggtgggactgactttctctaat 30616636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 21398630 - 21398701
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaagggg 111  Q
    ||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21398630 ccgatcatctaatctaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaagggg 21398701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 23199207 - 23199274
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||    
T  23199207 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaatggtttaaccttg 23199274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 29448930 - 29448862
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | || ||||| |||||||||||    
T  29448930 gagaaccaagagggagagagaccaccgatcatcaatactaaggtaatgatgagactaactttctctaat 29448862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 1627071 - 1627120
Alignment:
Q  58 gtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1627071 gtaagggtgggactagctttctctaataatgagttgtataattctaaaaa 1627120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 660841 - 660759
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||  |||| |||||||  ||||||||||||||    
T  660841 ctaaggtaaggg-gggactagctttctctaataaggggttgtataattctgaaaa-aggtttaaccttgtagttgttgttagttt 660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 26832711 - 26832658
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  26832711 gagaaccaagagggagagagaccgctgaccatcaatactacggtaagggtggga 26832658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 22240881 - 22240924
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggt 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22240881 gagaaccaagagggagagagaccgtcgatcatcaatactaaggt 22240924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 22241877 - 22241920
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggt 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22241877 gagaaccaagagggagagagaccgtcgatcatcaatactaaggt 22241920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 22242873 - 22242916
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggt 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22242873 gagaaccaagagggagagagaccgtcgatcatcaatactaaggt 22242916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 22243869 - 22243912
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggt 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22243869 gagaaccaagagggagagagaccgtcgatcatcaatactaaggt 22243912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 6551289 - 6551370
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag 134  Q
    |||||||||||||| ||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||  |||||||||||    
T  6551289 ctaaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgttag 6551370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 31622023 - 31621969
Alignment:
Q  59 taagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| |||| |||||||||||||| |||||||| |||||||||| |||||    
T  31622023 taagggtggaactatctttctctaataattggttgtatgattctaaaaatgggtt 31621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 20313328 - 20313227
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgtt--agtttgaggattagagaa 150  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||| |||  ||||| ||| | |  |||||||||  | ||||| ||||||||||    
T  20313328 ctaaggtaagggtgggactagc-ttctctaatagtgggtt-tataattctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 20313231  T
Q  151 atta 154  Q
    ||||    
T  20313230 atta 20313227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 17876293 - 17876243
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtg 66  Q
    |||||||||||||||||||||||| |||||||| |  |||| |||||||||    
T  17876293 gagaaccaagagggagagagaccgtcgatcatctaatctaatgtaagggtg 17876243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 36315534 - 36315476
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagc 74  Q
    |||||||||||| ||||||  |||||||||||  || |||||||||||||| |||||||    
T  36315534 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgagactagc 36315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 21300043 - 21300092
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  21300043 ctaaggtaagggtgggactaactttctctaattttaagttgtataattct 21300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 31622170 - 31622121
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||| || |||||||||||  | ||||||||||||||    
T  31622170 ctaaggtaagggtgggattaactttctctaattttaggttgtataattct 31622121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 41094780 - 41094836
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| ||||||  |||||||||||  || |||||||||||||| |||||    
T  41094780 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtgagacta 41094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 15009053 - 15008985
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15009053 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactaactttctctaat 15008985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 14631188 - 14631104
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  14631188 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 14631104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 16296991 - 16296907
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||| |  ||||||||||||||    
T  16296991 ctaaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacctggtagttgttgttagttt 16296907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 40620622 - 40620554
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  40620622 gagaactaagagggagagagaccgccgatcatcaatactaaggtaagggtgggaataactttctctaat 40620554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 10273436 - 10273377
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10273436 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggt 10273377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 14187047 - 14186980
Alignment:
Q  17 agaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  14187047 agaaccacgagggagagagaccgccgatcatcaatactaaggtaagggtgggagtaactttctctaat 14186980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 9622542 - 9622482
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  9622542 ctaaggtaagggtgggactagctttctctaataatgggttgtctgattctaaaaaggggtt 9622482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 25513904 - 25513820
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||| |||  ||||||||||||||    
T  25513904 ctaaggtaatggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttgttagttt 25513820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 55583249 - 55583189
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  55583249 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattataaaaaggggtt 55583189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 13847254 - 13847200
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13847254 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctaaaaa 13847200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 9639063 - 9638986
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||| |||||||  |||||||    
T  9639063 ctaaggtaagggtgggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaaccttgtagttgttg 9638986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 12424290 - 12424343
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12424290 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaa 12424343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 35661002 - 35660925
Alignment:
Q  60 aagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||  |||| |||||||  ||||||||||||||    
T  35661002 aagggtgggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttgtagttgttgttagttt 35660925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 26446260 - 26446176
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||  |||| || ||||  ||||||||||||||    
T  26446260 ctaaagtaagggtaggactagctttctctaataatgggttgtataattctgaaaaatggtttaatcttgtagttgttgttagttt 26446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 10057742 - 10057695
Alignment:
Q  25 gagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10057742 gagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 10057695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 33186955 - 33186888
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttg 121  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  33186955 taaggtaggggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttg 33186888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 15239815 - 15239882
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaacctt 120  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| ||| |||| ||||| ||||||    
T  15239815 ctaaggtaagggtgagactagctttctctaataatgaattgtataaatctgaaaaagggtttaacctt 15239882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 35660860 - 35660756
Alignment:
Q  135 tttgaggattagagaaattaaggttagaatttaaaattgaattgttgaaagagtaggta------------aaggaaataattggtgttcaggttgtaga 222  Q
    ||||| |||||||||||||| |||| ||||||||||||| |||||||| ||||||||||            |||| ||||||||||||||||||||||||    
T  35660860 tttgatgattagagaaattagggtttgaatttaaaattg-attgttgagagagtaggtaatccgatgaagtaaggtaataattggtgttcaggttgtaga 35660762  T
Q  223 ataatc 228  Q
    ||||||    
T  35660761 ataatc 35660756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 19434812 - 19434843
Alignment:
Q  197 gaaataattggtgttcaggttgtagaataatc 228  Q
    ||||||||||||||||||||||||||||||||    
T  19434812 gaaataattggtgttcaggttgtagaataatc 19434843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 14549552 - 14549518
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatc 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  14549552 aaggtaataattggtgttcaggttgtagaataatc 14549518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 15115275 - 15115226
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  15115275 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 15115226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 17143063 - 17142998
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    ||||| |||||||||||||  ||| ||||||||||||| |||||||||| ||| |||  |||||||    
T  17143063 tgggaatagctttctctaaagatgagttgtataattctgaaaaggggtttaacattgtagttgttg 17142998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 2424386 - 2424470
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||| |||||||||||  |  ||||||||||| | |||| ||||| || ||||  |||||| |||||||    
T  2424386 ctaaggtaagggtgagactaactttctctaattctaagttgtataattttgaaaaagggtttaatcttgtagttgttattagttt 2424470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 11425995 - 11425947
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  11425995 taaggtaagggtgggactaactttctctaattctaagttgtataattct 11425947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 19243689 - 19243633
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| |||| |  |||||||||||  || ||||||||||||||||||||    
T  19243689 gagaaccaagagagagaaaagccgccgatcattcattctaaggtaagggtgggacta 19243633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 25091705 - 25091657
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  25091705 taaggtaagggtgggactaactttctctaattctaagttgtataattct 25091657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 53630474 - 53630522
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  53630474 taaggtaagggtgggactaactttctctaattctaagttgtataattct 53630522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 2073 - 1989
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  2073 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 1989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5119 - 5051
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  5119 gagaaccaagagggagagagactgccgatcatcaatactaaggtaagggtgggactaactttctctaat 5051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5119 - 5051
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  5119 gagaaccaagagggagagagactgccgatcatcaatactaaggtaagggtgggactaactttctctaat 5051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 14002 - 13918
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||  ||||||||||||||    
T  14002 ctaaggtaagggtgggactagctttctctaataatgggttgtaaaattctgaaaaagggtttaaccttgaagttgttgttagttt 13918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 6458 - 6390
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  6458 gagaaccaagagggagagagaccgccgatcatcaatactaatgtaagggtgggactaactttctctaat 6390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 69815 - 69883
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  69815 gagaaccaagagggagagagactgccgatcatcaatactaaggtaagggtgggactaactttctctaat 69883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 186195 - 186279
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  186195 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 186279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 14585 - 14687
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag-tttgaggattagagaaa 151  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||  |||  ||||||||||| ||||| |||||||||||    
T  14585 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttgttagttttgatgattagagaaa 14684  T
Q  152 tta 154  Q
    |||    
T  14685 tta 14687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 23643 - 23745
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag-tttgaggattagagaaa 151  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||  |||  ||||||||||| ||||| |||||||||||    
T  23643 ctaaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttgttagttttgatgattagagaaa 23742  T
Q  152 tta 154  Q
    |||    
T  23743 tta 23745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 3421 - 3505
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||| |||||||  ||||||||||||||    
T  3421 ctaaggtaagggtgggactagctttctctaataatgcgttgtatgattctgaaaaagggtttaaccttgtagttgttgttagttt 3505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 11313 - 11245
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  11313 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgagtctaactttctctaat 11245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 15362 - 15294
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  15362 gagaaccaagagggagagagatcgccgatcatcattactaaggtaagggtgggactaactttctctaat 15294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 18328 - 18244
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||| ||||    
T  18328 ctaaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttggttt 18244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 21739 - 21807
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  21739 gagaaccaagagggagagagaccaccgatcatcaatactaaggtaaggatgggactaactttctctaat 21807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29178 - 29246
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  29178 gagaaccaagagggagagagaccgtcgatcatcaatactaaggtaagagtgggactaactttctctaat 29246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 9150 - 9093
Alignment:
Q  15 agagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9150 agagaaccaatagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 9047 - 8982
Alignment:
Q  19 aaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  9047 aaccaagagggagagtgaccaccgatcatcaatactaaggtaagggtgggactaactttctctaat 8982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 17520 - 17604
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  17520 ctaaggtaagggtcggactagctttttctaataatggattgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 17604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2027 - 1959
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||    
T  2027 gagaaccaagagggagagagaccaccgatcatcaatactaaggaaagggtgggactaactttatctaat 1959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 127342 - 127402
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  127342 ctaaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaaggggtt 127402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 75990 - 75930
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  75990 ctaaggtaagggtgggactagctttctccaataatgggttgtatgattctaaaaaggggtt 75930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 111413 - 111353
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  111413 ctaaggtaagggtggggctagctttctctaataatgggttgtatgattctaaaaaggggtt 111353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 73139 - 73080
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  73139 taaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaaggggtt 73080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 66061 - 66131
Alignment:
Q  43 atcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |||||    
T  66061 atcatctattctaaggtaagggtgggactagatttctttaataatgggttgtataattctgaaaaagggtt 66131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 66229 - 66277
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatcgtagaaagagtttc 242  Q
    |||| |||||||||||||||||||||||||||||| |||  ||||||||    
T  66229 aaggtaataattggtgttcaggttgtagaataatcataggtagagtttc 66277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 8732 - 8811
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaacct 119  Q
    ||||||||| |  |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  8732 ccgatcatctaatctaaggtaagggtgagactagcttactctaataatgggttgtatgattctaaaaaggggttgaacct 8811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 11160 - 11219
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11160 taaggtaaggatgggactagctttctctaataatgggttgtatgattctaaaaaggggtt 11219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 1128 - 1045
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |||||||  | ||||||||||||    
T  1128 taaggtaagggtgagactagctttctctaataatggattgtataattctgaaaaagggtttaaccttgtagatgttgttagttt 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 1255 - 1169
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||  |||||  |  |||||||||||||    
T  1255 gagaaccaagagggagagagaccgccgattatcaatactaaggtaagggtgtgactaacttttcctaattctaagttgtataattct 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 2454 - 2507
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2454 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaa 2507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 5685 - 5632
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5685 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaa 5632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 10999 - 10938
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgtatgattctaaaaagggtttaa 10938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 19922 - 19849
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| |  ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19922 ccgatcatctaatctaaggtaagggtaggactagatttctctaataatgggttgtatgattctaaaaaggggtt 19849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 5507 - 5447
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  5507 ctaaggtaagggtgggactacctttctctaataatgagttgtataattctgaaaaagggtt 5447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13727 - 13674
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||    
T  13727 gagaaccaacagggagagagaccgctgaccatcaatactacggtaagggtggga 13674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 11668 - 11609
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||| ||||||||||||||  ||||||||| |||||||||||||||||| |||| |||||    
T  11668 taagataagggtgggactaaatttctctaaaaatgggttgtataattctgaaaaagggtt 11609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5456 - 5400
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  5456 gagaaccaagagggagagagaccgccgatcattaattctaaggtaagggtgggacta 5400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 2300 - 2240
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  2300 ctaaggtaagggtgggactagctttctataataatgggttgtataattctgaaaaagggtt 2240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 2137 - 2108
Alignment:
Q  199 aataattggtgttcaggttgtagaataatc 228  Q
    ||||||||||||||||||||||||||||||    
T  2137 aataattggtgttcaggttgtagaataatc 2108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 15615 - 15698
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| ||| |||||||||||| |||||| |||||||||| ||||| |||||||  ||||||||||||||    
T  15615 ctaaggtaagggtgggactaactt-ctctaataatggtttgtatgattctaaaaaagggtttaaccttgtagttgttgttagttt 15698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 15047 - 14991
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  15047 gagaaccaagagggagagagaccgtcgatcatcaatactaaggtgagggtgggacta 14991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 17067 - 17011
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  17067 gagaaccaagagggagagagaccgtcgatcatcaatactaaggtgagggtgggacta 17011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 35185 - 35245
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  35185 ctaaggtaagggtggtactagctttccctaataatgggttgtataattctaaaaaagggtt 35245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 18626 - 18724
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgt-ataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||  |||| |||||||  ||||||||||||||    
T  18626 ccgatcatctaatctaaggtaagggtgggactagctttctctaataatgagttgtaataattttgaaaaaaggtttaaccttgtagttgttgttagttt 18724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 4988 - 4905
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct-aaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||| | |||  ||||||||||||||    
T  4988 taaggtaagggtgggactagctttctctaataat-ggttgtataattctgtaaaagggtttaacctttgtagttgttgttagttt 4905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 16694 - 16638
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  16694 gagaaccaagagggagagagaccgacgatcatcaatactaagcaaagggtgggacta 16638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 5390 - 5331
Alignment:
Q  15 agagaaccaagagggagagaga--ccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  5390 agagaaccaagagtgagagagagaccgccgatcatcaatactaaggtaagggtgggacta 5331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 12410 - 12351
Alignment:
Q  15 agagaaccaagagggagagaga--ccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  12410 agagaaccaagagtgagagagagaccgccgatcatcaatactaaggtaagggtgggacta 12351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 40160 - 40100
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  40160 ctaaggtaaggatgcgactaactttctctaataatgggttgtatgattctaaaaaggggtt 40100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 68725 - 68785
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||    
T  68725 ctaaggtaagggtgggactacctttctctaataatgggttatatgattctaaaaacgggtt 68785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1528 - 1475
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  1528 gagaaccaaaagggagacaggccgccgatcatcaatactaaggtaagggtggga 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 17926 - 18023
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |  |||||||||||||||||||| |||||||||||  |  ||||||||||||| |||| || || |||||||  ||||||||||||||    
T  17926 ccgatcatctaatctaaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaaggatttaaccttgtagttgttgttagttt 18023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 2199 - 2283
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||||||||||||||  ||||||||||  |  ||||||||||||| |||| ||||| |||||||  ||||||||||||||    
T  2199 ctaaggtaagggtgggactaattttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgttagttt 2283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0730 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 6504 - 6564
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggtt 113  Q
    ||||||||| || ||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  6504 ctaaggtaaaggcgggactacctttctctaataatgggttgtatgattctgaaaaggggtt 6564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 5304 - 5388
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||||||||||||||||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||  ||||||||| ||||    
T  5304 ctaaggtaagggtgggactaactttctctaattttaagttgtataattcttaaaaagggtttaaccttgtagttgttgttcgttt 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 8897 - 8839
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaagggg 111  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  8897 ctaagttaagggtgggactagctttatctaataatggattgtatgattctgaaaagggg 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 19260 - 19176
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    |||| ||||||||||||||| |||||||||||  |  ||||||||||||| |||| ||||| |||||||  |||||| |||||||    
T  19260 ctaacgtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttattagttt 19176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 43786 - 43887
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag--tttgaggattagagaa 150  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||  ||||| ||| | |  |||||| ||||  ||||| ||||||||||    
T  43786 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatggttgttgttattagattttgatgattagagaa 43883  T
Q  151 atta 154  Q
    ||||    
T  43884 atta 43887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 39094 - 39132
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggtt 92  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39094 ctaaggtaagggtgggactagc-ttctctaataatgggtt 39132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 6471 - 6408
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct-aaaaaggggttaa 115  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||||| |||||||| ||||    
T  6471 ctaaggtaagggtaagactagctttctctaataatgagttgtgtaattctgaaaaagggattaa 6408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 426 - 361
Alignment:
Q  65 tgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttg 130  Q
    |||||||||||||||||||  ||||||||||||||||| |||| ||||| ||| |||  |||||||    
T  426 tgggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 5615 - 5662
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  5615 ctaaggtaagggtgggactagc-ttctctaataatgggtt-tataattct 5662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 61834 - 61930
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttagttt 137  Q
    ||||||||| |  |||||||||||||| ||||| |||||||||||  |  ||||||||||||| |||| || || |||||||  ||||||||||||||    
T  61834 ccgatcatctaatctaaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaa-ggatttaaccttgtagttgttgttagttt 61930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 26776 - 26699
Alignment:
Q  57 ggtaagggtgggactagctttctctaataatgggttgtataattctaaaaaggggttaaaccttgccgttgttgttag 134  Q
    ||||||||||||| || |||||||||||  | |||||||||||||| |||| ||||| ||| |||  |||||||||||    
T  26776 ggtaagggtgggattaactttctctaattttaggttgtataattctgaaaaagggtttaactttgtagttgttgttag 26699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 21664 - 21633
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||||||||||||||    
T  21664 ctaaggtaagggtgggactagctttctctaat 21633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 21442 - 21408
Alignment:
Q  194 aaggaaataattggtgttcaggttgtagaataatc 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  21442 aaggtaataattggtgttcaggttgtagaataatc 21408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1941 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 191 - 142
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    |||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  191 ctaaggtaagggtgggactaactttctctaattctaagttgtataattct 142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 2942 - 2893
Alignment:
Q  53 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||| || |||||||||||  | ||||||||||||||    
T  2942 ctaaggtaagggtgggattaactttctctaattttaggttgtataattct 2893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 83086 - 83033
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtggga 69  Q
    |||||||||||| ||||||  |||||||||||  || |||||||||||||||||    
T  83086 gagaaccaagagagagagaagccgccgatcattcattctaaggtaagggtggga 83033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 117805 - 117837
Alignment:
Q  52 actaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||||||||||||||| |||||||||||    
T  117805 actaaggtaagggtgggactaactttctctaat 117837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1633 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 1257 - 1209
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  1257 taaggtaagggtgggactaactttctctaattctaagttgtataattct 1209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1283 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1283
Description:

Target: scaffold1283; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 468 - 516
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  468 taaggtaagggtgggactaactttctctaattctaagttgtataattct 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 21737 - 21681
Alignment:
Q  16 gagaaccaagagggagagagaccgccgatcatcaatactaaggtaagggtgggacta 72  Q
    |||||||||||| |||| |  |||||||||||  || ||||||||||||||||||||    
T  21737 gagaaccaagagagagaaaagccgccgatcattcattctaaggtaagggtgggacta 21681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 23893 - 23925
Alignment:
Q  55 aaggtaagggtgggactagctttctctaataat 87  Q
    |||||||||||| ||||||||||||||||||||    
T  23893 aaggtaagggtgagactagctttctctaataat 23925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 58812 - 58768
Alignment:
Q  40 ccgatcatcaatactaaggtaagggtgggactagctttctctaat 84  Q
    ||||||||| | | ||||||||||||||||||| |||||||||||    
T  58812 ccgatcatctaaattaaggtaagggtgggactaactttctctaat 58768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 78185 - 78233
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  78185 taaggtaagggtgggactaactttctctaattctaagttgtataattct 78233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 24131 - 24179
Alignment:
Q  54 taaggtaagggtgggactagctttctctaataatgggttgtataattct 102  Q
    ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  24131 taaggtaagggtgggactaactttctctaattctaagttgtataattct 24179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University