View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023R-Insertion-1 (Length: 1090)
Name: NF1023R-Insertion-1
Description: NF1023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023R-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 318 - 1044
Target Start/End: Complemental strand, 36799856 - 36799141
Alignment:
| Q |
318 |
ccaaaaaagggaaatttatcccttctctctccatatttttctatatatttacttgtatttttctattaatactattctcaaaatatatacaagagaagag |
417 |
Q |
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| T |
36799856 |
ccaaaaaagggaaatttatcccttctctctccatatttttctatatatttacttgtatttttctattaatactattctcaaaatatatacaagagaagag |
36799757 |
T |
|
| Q |
418 |
aggtagaaatgcatcacactcactcttcttgtaattctcatttgtgttctctcgtaatcattttgtcccttgaaaaatacaccctctttattcttctatc |
517 |
Q |
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| T |
36799756 |
aggtagaaatgcatcacactcactcttcttgtaattctcat-----------cgtaatcattttgtcccttgaaaaatacaccctctttattcttctatc |
36799668 |
T |
|
| Q |
518 |
atttctctcttgattagtatatttatgttatgttatccttctacaataaaatgtatttttatttttatgttatacatacataactatttaatgttgctga |
617 |
Q |
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| T |
36799667 |
atttctctctcgattagtatatttatgttatgttatacttctacaataaaatgtatttttat------gttatacatacataactatttaatgttgctga |
36799574 |
T |
|
| Q |
618 |
atttggtaaatatttgcgtctccacagagaattcaacatcaggaatgaggccaccaactcttaacatttttccttctcagcctatgcatgtagagccatc |
717 |
Q |
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| T |
36799573 |
atttggtaaatatttgcatctccacagagaattcaacatcaggaatgaggccaccaactcttaacatttttccttctcagcctatgcatgtagagccatc |
36799474 |
T |
|
| Q |
718 |
atcgtccaattctaaggtgtagttaataattatttcacgatgaattgtgttacacactactctcttattttgttacacttcatattaatatgtttttaat |
817 |
Q |
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| T |
36799473 |
atcgtccaattctaaggtgtagttaataattatttcacgatgaattgtgttacacactactctcttattttgttacacttcatattaatgtgtttttaat |
36799374 |
T |
|
| Q |
818 |
taattatttataggctagcatggatttagtttctccgcaaacaagtggatccaagaatggatcagagccacccaaagctgttaaggcacgtac-aaaatc |
916 |
Q |
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| T |
36799373 |
taattatttataggctagcatggatttagtttctccgcaaacaagtggatccaagaaaggatcagagccacccaaagctgttaaggcacgtacaaaaatc |
36799274 |
T |
|
| Q |
917 |
attatattaaaccaatatgttaattaatagtttatgatt-aaatgtaaagaaac-ataataagagttt-gttcatcnnnnnnntaataagagtttagtag |
1013 |
Q |
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| T |
36799273 |
attatattaaaccaatatgttaattaatagtttatgattaaaatgtaaagaaacaataataagagtttggttcatcaaaaaaataataagagtttggtag |
36799174 |
T |
|
| Q |
1014 |
catctttg-agcatatg-agttctgagctagtt |
1044 |
Q |
| |
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|||||||| |||||||| ||||||||||||||| |
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| T |
36799173 |
catctttgaagcatatgaagttctgagctagtt |
36799141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 36800164 - 36799907
Alignment:
| Q |
9 |
ctttttctctatcttaatggacaaactgacccatccagtgttcaagaccaaaaacgtgagnnnnnnnnnnccttccaaatcccaataatgttt-gcttga |
107 |
Q |
| |
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| T |
36800164 |
ctttttctctatcttaatggacaaactgacccatccagtgttcaagaccaaaaacgtgagttttttttt-cctttcaaatcccaataatgttttgcttga |
36800066 |
T |
|
| Q |
108 |
aattcaaaaagaaggagtcttttcctttcacttttggtttgttatagagaatctctttgttttacaccaatagcatgttcagcagaatcatatctgcagc |
207 |
Q |
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| T |
36800065 |
aattcaaaaagaaggagtcttttcctttcacttttggtttgttatagagaatctctttgtttcacaccaatagcatgttcagcagaatcatatctgcagc |
36799966 |
T |
|
| Q |
208 |
agagtactacctttgaccagatcctttctgcagaaaagcaaaacaaaccaaaagtgtgg |
266 |
Q |
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| T |
36799965 |
agagtactacctttgaccagatcctttctgcagaaaagcaaaacaaaccaaaagtgtgg |
36799907 |
T |
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Back To:
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