View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023R-Insertion-2 (Length: 981)
Name: NF1023R-Insertion-2
Description: NF1023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 41622500 - 41622904
Alignment:
| Q |
8 |
aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt |
107 |
Q |
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| T |
41622500 |
aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt |
41622599 |
T |
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| Q |
108 |
acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622600 |
acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat |
41622699 |
T |
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| Q |
208 |
aaactctgtgtgtgctatattaaagtacatgtatgcaaggtgtggagtcgagagtcctgcattttgcagttctgtaaatgtttgatgtccagttctttct |
307 |
Q |
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| T |
41622700 |
aaactctgtgtgtgctatattaaagtacatgtatgcaaggtatggagtcgagagtcctgcattttgcagttctgtaaatgtttgatgtccagttctttct |
41622799 |
T |
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| Q |
308 |
ttgatgtttacactttactggtaaagtccttgcttcatgtgatgaggtaacatattaggtccatggtgacaaatgaaaagcaagaggcttaggtgctttc |
407 |
Q |
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| T |
41622800 |
ttgatgtttacactttactggtaaagtccttgcttcatgtgatgaggtaacatattaggtccatggtgacaaatgaaaagcaagaggcttaggtgctttc |
41622899 |
T |
|
| Q |
408 |
ggcta |
412 |
Q |
| |
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| T |
41622900 |
ggcta |
41622904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 473 - 771
Target Start/End: Original strand, 41622965 - 41623263
Alignment:
| Q |
473 |
ctcatgttatgtaattcaattattgttctcaagttctataatgctattaagaaactgatgcaattggaaatacattgatataacaatttctccctagtgc |
572 |
Q |
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| T |
41622965 |
ctcatgttatgtaattcaattattgttctcaagttctataatgctattaagaaactgatgcaattggaaatacattgatataacaatttctccctagtgc |
41623064 |
T |
|
| Q |
573 |
agccgtctttaattttttggtgctattattaaaaggtgttaaaattccaatatacttttatgatgtattatatatgagatcgttttctcatactatgtct |
672 |
Q |
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| T |
41623065 |
agccgtctttaattttttggtgctattattaaaaggtgttaaaattccaatctacttttatgatgtattatataagagatcgttttctcatactatgtct |
41623164 |
T |
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| Q |
673 |
aggggccataaaatgttgggtacgaccctaagaaatttttgttatgctataatgttgtaaaacagccgctggtacttgattgagtaatataagtggttc |
771 |
Q |
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| T |
41623165 |
aggggccataaaatgttaggtacgaccctaagaaatttttgttatgctataatgttgtaaaacagccgctggtacttgattgagtaatataagtggttc |
41623263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 829 - 967
Target Start/End: Original strand, 41623264 - 41623404
Alignment:
| Q |
829 |
ttttgtctttcacaagctaatactgaaattttctgatagattacaaata-gaatatccacaactgctaatatcggaatttggataggtgcaacactaaat |
927 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623264 |
ttttgtctttcacaagctaacactgaaattttctgatagattacaaataagaatatccacaactgctaatatcggaatttggataggtgcaacactaaat |
41623363 |
T |
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| Q |
928 |
gagtcaaatttgagctc-aaactaaacttaaaaaataaata |
967 |
Q |
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| T |
41623364 |
gagtccaatttgagctcaaaactaaacttaaaaaataaata |
41623404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 49161654 - 49161716
Alignment:
| Q |
164 |
aattgcatagttgttttttaatagctatgctaattgcgaatgataaactctgtgtgtgctata |
226 |
Q |
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| T |
49161654 |
aattgcatagttgttttttaatagctgtattaattgctaatgataaactcggtatgtgctata |
49161716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 21035421 - 21035513
Alignment:
| Q |
473 |
ctcatgttatgtaattcaattattgttctcaagttctataatgctattaagaaactgatgcaattggaaatacattgatataacaatttctcc |
565 |
Q |
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| T |
21035421 |
ctcatgttatgtattccaattattgatctcatgtaccaaaatgatatttagaaactggtgtaatcgaaaatacattgatacaataatttctcc |
21035513 |
T |
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