View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1023_low_1 (Length: 900)

Name: NF1023_low_1
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1023_low_1
NF1023_low_1
[»] chr6 (2 HSPs)
chr6 (120-900)||(28153427-28154209)
chr6 (387-523)||(28141461-28141597)
[»] scaffold0019 (1 HSPs)
scaffold0019 (697-775)||(56151-56229)


Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 120 - 900
Target Start/End: Original strand, 28153427 - 28154209
Alignment:
Q  120 tacatacgaactaattattgtcctaagaaactcgccatgtccaagttacctaatagtcgtcttacgtcatctgaattgactgaatgatttcacaatactt 219  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28153427 tacatacgaactaattattgtcctaagaaactcaccatatccaagttacctaatagtcgtcctacgtcatctgaattgactgaatgatttcacaatactt 28153526  T
Q  220 ccccgatgcatagaaaactgtttctttatccttgatttatctcttttgattacttagtgatagatttcttctgatttgtgnnnnnnnnnn--gtgtgtgc 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  28153527 ccccgattcatagaaaactgtttctttatccttgatttatctcttttgattacttagtgatagatttcttctgatttgtgttttttttttttgtgtgtgc 28153626  T
Q  318 ttcaagggaacaagtagaattgaaattatatgtatggattacctgtcattagaagttggagacgtaaaagtagcatggaaaggagatgcgttcaagaaga 417  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |    
T  28153627 ttcaagggaacaagcagaattgaaattatatgtatggattacctgtcattggatgttggagacgtaaaagtagcatggaaaggagatgcgttcaagaaaa 28153726  T
Q  418 caaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaaggtcccggacatcttccaaataatttgagatttctagaatggcacagatatcc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28153727 caaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaagatcccggacatcttccaaataatttgagatttctagaatggcatagatatcc 28153826  T
Q  518 ttcacaggaagtttgcttaaatcatttgagtcaccttcctcattgaaggtttgagtaatagttctgtttgtatcatcttgtatgtcaatgcgtcgctttt 617  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28153827 ttcacatgaagtttgcttaaatcatttgagtcaccttcctcattgaaggtttgagtaatagttctgtttatatcatcttgtatgtcaatgcgtcgctttt 28153926  T
Q  618 aggttattcannnnnnnnnnnnnnnngcagaggttcatagatatgaaagagttaaatttagactac-gtggaagtctaaaacggatacttgacatatctg 716  Q
    ||||||||||                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28153927 aggttattca-ttttttttcctttttgcagaggttcatagatatgaaagagttaaatttagactactgtggaagtctaaaacggatacttgacatatctg 28154025  T
Q  717 gtctccaaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcaccattctatttgcctaaataaacttcaagtcctaattgctga 816  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28154026 gtctccgaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcaccattctgtttgcctaaataaacttcaagtcctagttgctga 28154125  T
Q  817 aggttgctgcaagcttaggagtttccaaccgatgaagttaacttttctttatcaactggatctctcatgttgttctagtctcaa 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154126 aggttgctgcaagcttaggagtttccaaccgatgaagttaacttttctttatcaactggatctctcatgttgttctagtctcaa 28154209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 523
Target Start/End: Original strand, 28141461 - 28141597
Alignment:
Q  387 gtagcatggaaaggagatgcgttcaagaagacaaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaaggtcccggacatcttccaaata 486  Q
    |||| ||||||||||||||  || |||||||   |||||||||||||||| || |||||||| ||   |||| |||||||||  |  |||||||||||||    
T  28141461 gtagaatggaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaata 28141560  T
Q  487 atttgagatttctagaatggcacagatatccttcaca 523  Q
    |||| ||| | || |||||||  || |||||||||||    
T  28141561 atttaagagtactggaatggcgtagttatccttcaca 28141597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 697 - 775
Target Start/End: Complemental strand, 56229 - 56151
Alignment:
Q  697 acggatacttgacatatctggtctccaaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcac 775  Q
    |||||||| |||||| || | ||||| ||||||||||||||||||| ||||||| ||||  |||||||||  |||||||    
T  56229 acggatacatgacatctccgatctcccaaatttagaaatattttcatttaaaaattgtaagaatttaattgaaattcac 56151  T

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