View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023_low_12 (Length: 265)
Name: NF1023_low_12
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 44454040 - 44453817
Alignment:
| Q |
30 |
tataggagcatcgaagattggaaaacgtgaaagaatgtcaactgaatcgttcaccatgacatcgttttcctcctcctcttcctccatatccgataaagaa |
129 |
Q |
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| T |
44454040 |
tataggagcatcgaagattggaaaacgtgaaagaatgtcaactgaatcgttcaccatgacatcgttttcctcctcctcttcctccatatccgataaagaa |
44453941 |
T |
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| Q |
130 |
ggatcgcctcctcccatctaaagtgaaaatgtcggcggcagtaaccaccatcaacgacggcgnnnnnnnnnnnnnnnnnnnnagaaaagggaagttgtga |
229 |
Q |
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| T |
44453940 |
ggatcgcctcctcccatctaaagtgaaaatgtcggcggcagtaaccaccatcaacgacggcggagagagaga------------aaaagggaagttgtga |
44453853 |
T |
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| Q |
230 |
gtgaagagacacattggatttatctgtgtgagtttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44453852 |
gtgaagagacacattggatttatctgtgtgagtttg |
44453817 |
T |
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