View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023_low_13 (Length: 257)
Name: NF1023_low_13
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31523771 - 31524017
Alignment:
| Q |
1 |
tgccagtgtcgtgtccggtgtctgtgtttgtgcttcatagatgattatatattttccttaacgttgaaagagtaacgttgcatgcatgcaacagattgtt |
100 |
Q |
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| T |
31523771 |
tgccagtgtcgtgtccggtgtctgtgtttgtgcttcatagatgattatatattttccttaacgttgaaagagtaacgttgcatgcatgcaacagattgtt |
31523870 |
T |
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| Q |
101 |
gccaaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaatataacaaacaaatctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523871 |
gccaaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaatataacaaacaaatctaa |
31523970 |
T |
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| Q |
201 |
tcaaaattcaaatacattttgtatgtaggtacatatatttttctgtg |
247 |
Q |
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| T |
31523971 |
tcaaaattcaaatacattttgtatgtaggtacatatatttttctgtg |
31524017 |
T |
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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 15128477 - 15128381
Alignment:
| Q |
86 |
atgcaacagattgttgccaaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaa |
182 |
Q |
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| T |
15128477 |
atgcaatagattgttgccaaagatttaccagaagagtccaagagacttggtagcttgctgattgtttccttaagctgacatttctctacagcctaaa |
15128381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 5279577 - 5279655
Alignment:
| Q |
104 |
aaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaa |
182 |
Q |
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| T |
5279577 |
aaagacttaccagaagagtccaagagacttggtagcttgctgattgtttccttaagctgacatttctctacagcctaaa |
5279655 |
T |
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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 5316519 - 5316437
Alignment:
| Q |
104 |
aaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaatata |
186 |
Q |
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| T |
5316519 |
aaagacttaccagaagagtccaagagacttggtagcttgctgattgtttccttaagctgacatttttttacagcctaaatata |
5316437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 14946588 - 14946681
Alignment:
| Q |
112 |
accagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaatataacaaacaaatctaatcaaa |
205 |
Q |
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| T |
14946588 |
accagaagagtccaagagacttggtagcttgcagattgtttccttaagctgacatttctctacagcctaaacatacaaatcaaatataatcaaa |
14946681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 5309871 - 5309804
Alignment:
| Q |
104 |
aaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctc |
171 |
Q |
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| T |
5309871 |
aaagacttaccagaagagtccaagagacttgatagcttgctgattgtttccttaagctgacatttctc |
5309804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 5287309 - 5287391
Alignment:
| Q |
104 |
aaagactaaccagaagagtccaagagacttggtagcctgctgattgtttccttgaggtgacatttctccaaagcctaaatata |
186 |
Q |
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||||||| |||||||||||| |||||| |||||||| |||||||||||||||| || |||||||| || | |||||||||||| |
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| T |
5287309 |
aaagacttaccagaagagtctaagagatttggtagcttgctgattgtttccttaagctgacatttttctacagcctaaatata |
5287391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 19262983 - 19263021
Alignment:
| Q |
4 |
cagtgtcgtgtccggtgtctgtgtttgtgcttcatagat |
42 |
Q |
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| T |
19262983 |
cagtgtcgtgtccggtgtctgtgttcgtgcttcacagat |
19263021 |
T |
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