View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1023_low_2 (Length: 878)

Name: NF1023_low_2
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1023_low_2
NF1023_low_2
[»] chr6 (2 HSPs)
chr6 (98-878)||(28153427-28154209)
chr6 (365-501)||(28141461-28141597)
[»] scaffold0019 (1 HSPs)
scaffold0019 (675-753)||(56151-56229)


Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 98 - 878
Target Start/End: Original strand, 28153427 - 28154209
Alignment:
Q  98 tacatacgaactaattattgtcctaagaaactcgccatgtccaagttacctaatagtcgtcttacgtcatctgaattgactgaatgatttcacaatactt 197  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28153427 tacatacgaactaattattgtcctaagaaactcaccatatccaagttacctaatagtcgtcctacgtcatctgaattgactgaatgatttcacaatactt 28153526  T
Q  198 ccccgatgcatagaaaactgtttctttatccttgatttatctcttttgattacttagtgatagatttcttctgatttgtgnnnnnnnnnn--gtgtgtgc 295  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  28153527 ccccgattcatagaaaactgtttctttatccttgatttatctcttttgattacttagtgatagatttcttctgatttgtgttttttttttttgtgtgtgc 28153626  T
Q  296 ttcaagggaacaagtagaattgaaattatatgtatggattacctgtcattagaagttggagacgtaaaagtagcatggaaaggagatgcgttcaagaaga 395  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |    
T  28153627 ttcaagggaacaagcagaattgaaattatatgtatggattacctgtcattggatgttggagacgtaaaagtagcatggaaaggagatgcgttcaagaaaa 28153726  T
Q  396 caaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaaggtcccggacatcttccaaataatttgagatttctagaatggcacagatatcc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28153727 caaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaagatcccggacatcttccaaataatttgagatttctagaatggcatagatatcc 28153826  T
Q  496 ttcacaggaagtttgcttaaatcatttgagtcaccttcctcattgaaggtttgagtaatagttctgtttgtatcatcttgtatgtcaatgcgtcgctttt 595  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28153827 ttcacatgaagtttgcttaaatcatttgagtcaccttcctcattgaaggtttgagtaatagttctgtttatatcatcttgtatgtcaatgcgtcgctttt 28153926  T
Q  596 aggttattcannnnnnnnnnnnnnnngcagaggttcatagatatgaaagagttaaatttagactac-gtggaagtctaaaacggatacttgacatatctg 694  Q
    ||||||||||                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28153927 aggttattca-ttttttttcctttttgcagaggttcatagatatgaaagagttaaatttagactactgtggaagtctaaaacggatacttgacatatctg 28154025  T
Q  695 gtctccaaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcaccattctatttgcctaaataaacttcaagtcctaattgctga 794  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28154026 gtctccgaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcaccattctgtttgcctaaataaacttcaagtcctagttgctga 28154125  T
Q  795 aggttgctgcaagcttaggagtttccaaccgatgaagttaacttttctttatcaactggatctctcatgttgttctagtctcaa 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154126 aggttgctgcaagcttaggagtttccaaccgatgaagttaacttttctttatcaactggatctctcatgttgttctagtctcaa 28154209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 501
Target Start/End: Original strand, 28141461 - 28141597
Alignment:
Q  365 gtagcatggaaaggagatgcgttcaagaagacaaaaaacctcaaaactttgatcattaaaagtggcttctttcccaaaggtcccggacatcttccaaata 464  Q
    |||| ||||||||||||||  || |||||||   |||||||||||||||| || |||||||| ||   |||| |||||||||  |  |||||||||||||    
T  28141461 gtagaatggaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaata 28141560  T
Q  465 atttgagatttctagaatggcacagatatccttcaca 501  Q
    |||| ||| | || |||||||  || |||||||||||    
T  28141561 atttaagagtactggaatggcgtagttatccttcaca 28141597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 753
Target Start/End: Complemental strand, 56229 - 56151
Alignment:
Q  675 acggatacttgacatatctggtctccaaaatttagaaatattttcaattaaaaaatgtataaatttaattacaattcac 753  Q
    |||||||| |||||| || | ||||| ||||||||||||||||||| ||||||| ||||  |||||||||  |||||||    
T  56229 acggatacatgacatctccgatctcccaaatttagaaatattttcatttaaaaattgtaagaatttaattgaaattcac 56151  T

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