View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023_low_3 (Length: 575)
Name: NF1023_low_3
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 30 - 517
Target Start/End: Complemental strand, 52409689 - 52409214
Alignment:
| Q |
30 |
tgcctatccctcgcccccaaaaagttatgtactataacctttacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatga |
129 |
Q |
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| T |
52409689 |
tgcctatccctcgcccccaaaaagttatg------------tacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatga |
52409602 |
T |
|
| Q |
130 |
gagaaagaactctaattccaacatttgtcttttgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttga |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409601 |
gagaaagaactctaattccaacatttgtcttctgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttga |
52409502 |
T |
|
| Q |
230 |
attaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatagttaatttgcaccttaattaggcttgtgtacaat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52409501 |
attaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatatttaatttgcaccttaattaggcttgtgtacaat |
52409402 |
T |
|
| Q |
330 |
taatctttatgtccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccact |
429 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409401 |
taatctttatttccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccact |
52409302 |
T |
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| Q |
430 |
gccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatctcactcg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52409301 |
gccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
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