View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1023_low_4 (Length: 545)
Name: NF1023_low_4
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 99 - 545
Target Start/End: Complemental strand, 37138360 - 37137928
Alignment:
| Q |
99 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37138360 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
37138261 |
T |
|
| Q |
199 |
ttctaccatctacttcactaggaatattcgttttgtaatcattacaaaacaaaacnnnnnnnnnnngtctttgagctcaaattaacatatgccaggcatg |
298 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
37138260 |
ttctaccatctacttcactacgaatattcgttttgtaatcattacaaaacacaac--------------tttgagctcaaattaacatatgcctggcatg |
37138175 |
T |
|
| Q |
299 |
ttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgccttcatcagttggtgtttcagtttccaatgactgactttttcctctac |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
37138174 |
ttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgctttcatcagttggaatttcagttcccaatgactgactttttcctctac |
37138075 |
T |
|
| Q |
399 |
aataccattcaggcattggtatttctgagggaaaattgttgagcaagcaatccaaatcatcatcgtacattgtattcagttcttcctcttgatcctcctg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37138074 |
aataccattcaggcattggtatttctgagggaaaattgttgagcaagcaatccaaatcatcatcatacattgtattcagttcttccgtctgatcctcctg |
37137975 |
T |
|
| Q |
499 |
gactggtttcttccctgnnnnnnnnacaagtttcatatgactttagt |
545 |
Q |
| |
|
| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
37137974 |
ggctggtttctttcctgttttttttacaagtttcatatgactttagt |
37137928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University