View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1023_low_6 (Length: 414)

Name: NF1023_low_6
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1023_low_6
NF1023_low_6
[»] chr8 (9 HSPs)
chr8 (13-208)||(8698775-8698976)
chr8 (203-366)||(8698996-8699180)
chr8 (223-298)||(17793188-17793263)
chr8 (223-298)||(38901359-38901434)
chr8 (105-173)||(8689667-8689736)
chr8 (223-298)||(14581331-14581406)
chr8 (223-294)||(7176802-7176873)
chr8 (223-293)||(14729024-14729094)
chr8 (299-354)||(17793106-17793161)
[»] chr6 (4 HSPs)
chr6 (223-299)||(29383755-29383831)
chr6 (223-297)||(6794030-6794104)
chr6 (299-355)||(6794125-6794181)
chr6 (299-354)||(29383853-29383908)
[»] scaffold1114 (2 HSPs)
scaffold1114 (223-298)||(2237-2312)
scaffold1114 (299-355)||(2160-2216)
[»] chr3 (9 HSPs)
chr3 (223-298)||(14476999-14477074)
chr3 (223-298)||(22909292-22909367)
chr3 (224-298)||(52669628-52669702)
chr3 (223-298)||(29178705-29178780)
chr3 (223-298)||(4489378-4489453)
chr3 (223-298)||(47180544-47180618)
chr3 (301-355)||(22909213-22909267)
chr3 (302-355)||(14477100-14477153)
chr3 (299-343)||(47180475-47180519)
[»] chr1 (16 HSPs)
chr1 (223-299)||(50270651-50270727)
chr1 (223-298)||(4447883-4447958)
chr1 (223-298)||(14884521-14884596)
chr1 (225-299)||(44574005-44574079)
chr1 (223-298)||(14396108-14396183)
chr1 (223-298)||(23740001-23740075)
chr1 (301-348)||(44574103-44574150)
chr1 (223-291)||(31636392-31636460)
chr1 (223-298)||(23624736-23624811)
chr1 (223-298)||(44415813-44415888)
chr1 (223-293)||(5300357-5300426)
chr1 (299-348)||(23624660-23624709)
chr1 (314-355)||(50270574-50270615)
chr1 (299-355)||(44415729-44415785)
chr1 (301-348)||(4447167-4447214)
chr1 (299-335)||(14884464-14884500)
[»] chr5 (10 HSPs)
chr5 (226-298)||(37194170-37194242)
chr5 (223-298)||(32534744-32534819)
chr5 (223-297)||(39324200-39324274)
chr5 (223-298)||(33207624-33207699)
chr5 (223-298)||(4277525-4277600)
chr5 (302-348)||(4277628-4277674)
chr5 (223-294)||(8433856-8433928)
chr5 (299-348)||(33207720-33207769)
chr5 (299-347)||(32534673-32534721)
chr5 (315-345)||(37194102-37194132)
[»] chr7 (6 HSPs)
chr7 (223-348)||(27816311-27816442)
chr7 (223-298)||(33987674-33987748)
chr7 (302-356)||(33987588-33987642)
chr7 (223-294)||(46209122-46209192)
chr7 (223-298)||(41003496-41003570)
chr7 (301-355)||(46209223-46209277)
[»] chr4 (10 HSPs)
chr4 (223-298)||(2128857-2128932)
chr4 (223-298)||(40046894-40046969)
chr4 (241-299)||(45064096-45064154)
chr4 (223-298)||(39193162-39193236)
chr4 (299-354)||(40046817-40046872)
chr4 (247-298)||(50122630-50122681)
chr4 (299-348)||(50122704-50122753)
chr4 (223-294)||(2062296-2062366)
chr4 (316-355)||(45081657-45081696)
chr4 (223-269)||(40757949-40757995)
[»] scaffold0110 (2 HSPs)
scaffold0110 (299-353)||(26968-27020)
scaffold0110 (223-293)||(26865-26935)
[»] chr2 (2 HSPs)
chr2 (223-291)||(449175-449242)
chr2 (223-286)||(9976740-9976802)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 8698775 - 8698976
Alignment:
Q  13 gagaccgtggaagattctcatctcattcattcttacgtggttgaattagcacatccacttcattaattaagtagta------ctatgcaaacatgcctaa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||||||||||||    
T  8698775 gagactgtggaagattctcatctcattcattcttacgtggttgaattagcacatccacttcattaattaagtagtaggagtactatccaaacatgcctaa 8698874  T
Q  107 tatgcctatagttcttaaaagtatacattttctacttatctattttacactataaaccaaggaagagcctaggagcatctacaatattgtagagattctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8698875 tatgcctatagttcttaaaagtatacattttctacttatctattttacactataaaccaaggaagagcctaggagcatctacaatattgtagagattctc 8698974  T
Q  207 at 208  Q
    ||    
T  8698975 at 8698976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 8698996 - 8699180
Alignment:
Q  203 tctcatattgacacataattttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa---- 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||        
T  8698996 tctcatattgacatataattttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttttatcttttaagacccttaatttt 8699095  T
Q  299 -----------------acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaagaggtgtaagtt 366  Q
                     ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  8699096 ttttccacaacggggatacctattaggtacgaggtcttaaatgtttaagattctcccattgtggatgttctaagaggtgtaagtt 8699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 17793263 - 17793188
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  17793263 ttttaataaaaaggtgatgtgtgcccatttaagaatgaggtcttaatttagaccttgcatcttttaagaccctcaa 17793188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 38901359 - 38901434
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  38901359 ttttaataaaaaggtgatgtgggtccatttaagaatgaggtcttaatttagacctttcatcttttaagaccctcaa 38901434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 8689667 - 8689736
Alignment:
Q  105 aatatgcctatagttcttaaaagtatacattttctacttatctatttt-acactataaaccaaggaagag 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||    
T  8689667 aatatgcctatagttcttaaaagtatacattttctacttatctgttttcacactataaactaagtaagag 8689736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 14581331 - 14581406
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||| || ||||||||||||  |||||||||||||| |||||| |||||||||||||||    
T  14581331 ttttaataaaaaggtgatgtgagctcatttaagaatgatgtcttaatttagacattgcatattttaagaccctcaa 14581406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 7176802 - 7176873
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtag-tcttaatttagaccttgcatcttttaagaccc 294  Q
    ||||||||||||| ||| |||||| ||||||||||||  | |||||| |||||||||| ||||||||||||||    
T  7176802 ttttaataaaaag-tgatgtgggctcatttaagaatgggggtcttaagttagaccttggatcttttaagaccc 7176873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 14729024 - 14729094
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaat-gtagtcttaatttagaccttgcatcttttaagacc 293  Q
    ||||||||||||| ||| |||||||||||||||||| |  ||||||| |||||| ||| |||||||||||||    
T  14729024 ttttaataaaaag-tgatgtgggcccatttaagaatgggggtcttaagttagacattggatcttttaagacc 14729094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 17793161 - 17793106
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaa 354  Q
    ||||||||| ||| | ||||||||||||||||||| | |||||||||||| |||||    
T  17793161 acctattaggtaccatgtcttaaatgtttaagactatcccattgtggatgctctaa 17793106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 29383755 - 29383831
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaaa 299  Q
    |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  29383755 ttttaataaaaaggtgatatgggcccatttaagaatgatgtcttaatttagaccttgcatcttttaagaccctcaaa 29383831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 6794030 - 6794104
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctca 297  Q
    |||||||||||||||   ||||| |||||||||||||  |||||| |||||||||||||||||||||| ||||||    
T  6794030 ttttaataaaaaggtagtgtgggtccatttaagaatgaggtcttagtttagaccttgcatcttttaaggccctca 6794104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 6794125 - 6794181
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    ||||||||| ||| |||||||||||||||||||| || |||||||||||| ||||||    
T  6794125 acctattaggtaccaggtcttaaatgtttaagaccctcccattgtggatgctctaag 6794181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 29383853 - 29383908
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaa 354  Q
    ||||||||| ||| | ||||||||||||||||||||| |||||||||||| |||||    
T  29383853 acctattaggtaccacgtcttaaatgtttaagactctcccattgtggatgctctaa 29383908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 2312 - 2237
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  2312 ttttaataaaaaggtgatgtgggcccatttaagaatgaggtcttaatttagactttgcatcttttaagaccctcaa 2237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 2216 - 2160
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    ||||||||  ||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  2216 acctattatgtaccaggtcttaaatgtttaagactcttcttttgtggatgatctaag 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 14476999 - 14477074
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14476999 ttttaataaaaagatgatgtgggcccatttaagaatgaggtcttaatttagaccttgcatcttttaagaccctcaa 14477074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 22909367 - 22909292
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||||| | |||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  22909367 ttttaataaaaaggtgatgtgggtctatttaagaatgaggtcttaatttagaccttgcatcttttaaatccctcaa 22909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 52669702 - 52669628
Alignment:
Q  224 tttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||||||||||| || |||||||||| ||||    
T  52669702 tttaatgaaaaggtgatgtgggcccatttaagaatgaggtcttaatttagaccttgtattttttaagaccttcaa 52669628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 29178705 - 29178780
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||||  |||||||||||||   ||||||||||||||||| ||||||||| | ||||||    
T  29178705 ttttaataaaaaggtgatgtggatccatttaagaatgatatcttaatttagaccttgtatcttttaaaatcctcaa 29178780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 4489453 - 4489378
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||| | |   |||||||||||||||  ||||||||||| ||||||||| |||||||| ||||||    
T  4489453 ttttaataaaaaggtaatgatagcccatttaagaatgaggtcttaatttaaaccttgcattttttaagatcctcaa 4489378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 47180618 - 47180544
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttag-accttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||| ||||  |||||||||||||  ||||||||  || |||||||||||||||||||||||||    
T  47180618 ttttaataaaaatgtgatgtggatccatttaagaatgaggtcttaat--agtaccttgcatcttttaagaccctcaa 47180544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 22909267 - 22909213
Alignment:
Q  301 ctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    ||||||| ||| ||||||||||| ||||||||||| ||||||| |||| ||||||    
T  22909267 ctattaggtaccaggtcttaaatatttaagactctcccattgtagatgctctaag 22909213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 14477100 - 14477153
Alignment:
Q  302 tattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    |||||| |||  ||||||||||||| |||||||| |||||||||||| ||||||    
T  14477100 tattaggtaccgggtcttaaatgttgaagactctcccattgtggatgctctaag 14477153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 47180519 - 47180475
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgt 343  Q
    ||||||||||||  || |||||||||||||||||||| |||||||    
T  47180519 acctattagatatcagatcttaaatgtttaagactctcccattgt 47180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 50270727 - 50270651
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaaa 299  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||    
T  50270727 ttttaataaaaaggtgatgtgggcccatttaagaatgatgtcttaatttaaaccttgcatcttttaaaaccctcaaa 50270651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 4447958 - 4447883
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  4447958 ttttaataaaaaagtgatgtgggcccatttaagaatgaggtcttaatttagactttgcatcttttaagaccctcaa 4447883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 14884596 - 14884521
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| |||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  14884596 ttttaataaaaaggtgatgtgggcacatttaagaatgatgtcttaatttaaaccttgcatcttttaagaccctcaa 14884521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 44574005 - 44574079
Alignment:
Q  225 ttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaaa 299  Q
    ||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||| |||||||||||| |||||||    
T  44574005 ttaataaaaaggtgatgtgagcccatttaaaaatgaggtcttaatttagaccttacatcttttaagatcctcaaa 44574079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 14396108 - 14396183
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||| |||||  |||| ||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  14396108 ttttattaaaatagtgatgtgagcccatttaagaatgaggtcttaatttagacattgcatcttttaagaccctcaa 14396183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 23740075 - 23740001
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| |||||||||||||| ||||   |||||||||||||||| |||||||| ||||||||||    
T  23740075 ttttaataaaaaggtgatgtgggcccatttaaaaatgagatcttaatttagacctt-catcttttcagaccctcaa 23740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 44574103 - 44574150
Alignment:
Q  301 ctattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44574103 ctattagatacgaggtcttaaatatttaagactcttccattgtggatg 44574150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 31636460 - 31636392
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaaga 291  Q
    |||| |||||||||||| |||  ||||||||||||||  ||||||||||||||||| ||||||||||||    
T  31636460 tttttataaaaaggtgatgtgaacccatttaagaatgaggtcttaatttagaccttacatcttttaaga 31636392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 23624811 - 23624736
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||| ||||||| |||||||||||  ||| ||||||||||||| |||||||| | ||||||||    
T  23624811 ttttaataaaaaagtgatgtgggccaatttaagaatgaggtcataatttagaccttccatcttttcaaaccctcaa 23624736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 44415888 - 44415813
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||| ||||   ||||||||||||  ||||||||||| || ||||||||||||||||||||||    
T  44415888 ttttaataaaaatgtgatgtggattcatttaagaatgaggtcttaatttatactttgcatcttttaagaccctcaa 44415813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 5300426 - 5300357
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagacc 293  Q
    ||||||||||||| ||| ||| |||||||||||||||  ||||||| |||||||||| |||||||||||||    
T  5300426 ttttaataaaaag-tgatgtgagcccatttaagaatggggtcttaagttagaccttgtatcttttaagacc 5300357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 23624709 - 23624660
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||||||||    
T  23624709 acctattaggtatcaggtcttaaatgtttaagactctcccattgtggatg 23624660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 50270615 - 50270574
Alignment:
Q  314 ggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  50270615 ggtcttaaatgtttaagactctcccattgtggatgctctaag 50270574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 44415785 - 44415729
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    ||||||||| ||  ||||||||||||||||||||||| ||| |||||||| ||||||    
T  44415785 acctattaggtatcaggtcttaaatgtttaagactctcccactgtggatgctctaag 44415729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 4447214 - 4447167
Alignment:
Q  301 ctattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    ||||||| ||| | ||||||||||||||||||||| ||||||||||||    
T  4447214 ctattaggtaccaagtcttaaatgtttaagactctcccattgtggatg 4447167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 14884500 - 14884464
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactct 335  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14884500 acctattagataccagatcttaaatgtttaagactct 14884464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 37194242 - 37194170
Alignment:
Q  226 taataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  37194242 taataaaaaggtaacgtggacccatttaagaatgacgtcttaatttagaccttgcatcatttaagaccctcaa 37194170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 32534819 - 32534744
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||||||| ||||||||||   ||||||||||||||||| |||||||||||||| ||||    
T  32534819 ttttaataaaaaggtgatgtgggccaatttaagaataaggtcttaatttagaccttacatcttttaagaccttcaa 32534744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 39324200 - 39324274
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctca 297  Q
    ||||||||||||||||  ||||| ||||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  39324200 ttttaataaaaaggtggtgtgggtccatttaagaatgaaatcttaatttagaatttgcatcttttaagaccctca 39324274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 33207624 - 33207699
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||||  ||||||||||||| ||| |||||||||||||| ||| |||||||| ||||||    
T  33207624 ttttaataaaaaggtgatgtggatccatttaagaatgaagttttaatttagacctttcatattttaagatcctcaa 33207699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 4277525 - 4277600
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    |||||||||||| |||| ||||  |||||||||||||  ||||||||| ||| ||| |||||||||||||||||||    
T  4277525 ttttaataaaaaagtgatgtggatccatttaagaatgaggtcttaattaagaacttccatcttttaagaccctcaa 4277600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 4277628 - 4277674
Alignment:
Q  302 tattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  4277628 tattaggtacgaggtcttatatgtttaagactcttccattgtggatg 4277674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 8433856 - 8433928
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtag--tcttaatttagaccttgcatcttttaagaccc 294  Q
    ||||||||||||| ||| ||| ||||||||||||||| ||  |||||| |||||||||| ||||||||||||||    
T  8433856 ttttaataaaaag-tgatgtgagcccatttaagaatgaaggatcttaagttagaccttggatcttttaagaccc 8433928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 33207720 - 33207769
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    ||||||||| ||| ||||||||||||||||| |||||||||| |||||||    
T  33207720 acctattaggtaccaggtcttaaatgtttaaaactcttccatcgtggatg 33207769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 32534721 - 32534673
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggat 347  Q
    ||||||||  ||| ||||||||||||||||||||||||| |||||||||    
T  32534721 acctattaagtactaggtcttaaatgtttaagactcttcaattgtggat 32534673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 37194132 - 37194102
Alignment:
Q  315 gtcttaaatgtttaagactcttccattgtgg 345  Q
    |||||||||||||||||||||||||||||||    
T  37194132 gtcttaaatgtttaagactcttccattgtgg 37194102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 27816442 - 27816311
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa------acctattagatacgaggt 316  Q
    ||||||||||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||| | ||||||       | |||||| ||| | ||    
T  27816442 ttttaataaaaaggtgatgtgggcccaattaagaatgatatcttaatttagaccttgcatcttttaaaatcctcaatttttttcgtattaggtaccatgt 27816343  T
Q  317 cttaaatgtttaagactcttccattgtggatg 348  Q
    ||||||| |||||| ||| |||||||||||||    
T  27816342 cttaaatatttaagcctcctccattgtggatg 27816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 33987748 - 33987674
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  33987748 ttttaataaaaag-tgatgtgggcccatttaagaatgatgtcttaatttagaccttgcatctttcaagaccatcaa 33987674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 33987642 - 33987588
Alignment:
Q  302 tattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaaga 356  Q
    |||||||||| || |||||||||||||||||| |||||||||||||| |||||||    
T  33987642 tattagataccagatcttaaatgtttaagactattccattgtggatgctctaaga 33987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 46209122 - 46209192
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccc 294  Q
    ||||||||||||| ||| ||||  |||||||||||||  ||||||| |||||||||| ||||||||||||||    
T  46209122 ttttaataaaaag-tgatgtggatccatttaagaatgaggtcttaaattagaccttggatcttttaagaccc 46209192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 41003496 - 41003570
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||| ||||||||||| |||| ||||||||| ||||  ||||||||||| || ||| || |||||||||||||||    
T  41003496 ttttagtaaaaaggtgatgtggacccatttaaaaatgaggtcttaatttaaacattgtat-ttttaagaccctcaa 41003570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 46209223 - 46209277
Alignment:
Q  301 ctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    |||||||||||||||||||||||| |||| |||   |||||||||||| ||||||    
T  46209223 ctattagatacgaggtcttaaatgattaaaacttcaccattgtggatgctctaag 46209277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 2128932 - 2128857
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| |||||||  ||||||||||  ||||||||||| || ||||||||||||||||||||||    
T  2128932 ttttaataaaaaggtgatgtgggccagtttaagaatgatgtcttaatttaaactttgcatcttttaagaccctcaa 2128857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 40046969 - 40046894
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| ||| ||| |||||||||||   |||||||||||| |||||||||||||||||||||||    
T  40046969 ttttaataaaaaggtgatgtgagccaatttaagaatgagatcttaatttagatcttgcatcttttaagaccctcaa 40046894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 45064154 - 45064096
Alignment:
Q  241 gtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaaa 299  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  45064154 gtgggcctatttaagaatgatgtcttaatttagaccttgcatcttttaagactctcaaa 45064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 39193236 - 39193162
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||| |||  ||||||||||||||||||    
T  39193236 ttttaataaaaaggtgatgtggtcctatttaagaatgaggtcttaatttaga-cttaaatcttttaagaccctcaa 39193162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 40046872 - 40046817
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttctaa 354  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||    
T  40046872 acctattaggtacgaggtcttaattatttaagactcttccattgtgaatgttctaa 40046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 50122630 - 50122681
Alignment:
Q  247 ccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccctcaa 298  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  50122630 ccatttaagaatgaagtcttaatttaaaccctgcatcttttaagaccctcaa 50122681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 50122704 - 50122753
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatg 348  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  50122704 acctaataggtacgagatcttaaatgtttaagactcttccattgtggatg 50122753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 2062366 - 2062296
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagaccc 294  Q
    ||||||||||||| ||||||| |||||||||||||||  || |||| |||||||||  ||||||||| ||||    
T  2062366 ttttaataaaaag-tgacgtgagcccatttaagaatgaggttttaagttagacctttgatcttttaaaaccc 2062296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 45081657 - 45081696
Alignment:
Q  316 tcttaaatgtttaagactcttccattgtggatgttctaag 355  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45081657 tcttaaatggttaagactcttctattgtggatgttctaag 45081696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 40757949 - 40757995
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaat 269  Q
    ||||||||||||||||| |||| ||||||||||||||  ||||||||    
T  40757949 ttttaataaaaaggtgatgtggacccatttaagaatgaggtcttaat 40757995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 26968 - 27020
Alignment:
Q  299 acctattagatacgaggtcttaaatgtttaagactcttccattgtggatgttcta 353  Q
    ||||||||||||| || |||||||||||||  |||||||||||||||||||||||    
T  26968 acctattagatactagatcttaaatgttta--actcttccattgtggatgttcta 27020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 26865 - 26935
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaagacc 293  Q
    ||||||||||||||||| |||| ||||||||| ||||   |||||||||| || || ||||||||||||||    
T  26865 ttttaataaaaaggtgatgtggacccatttaaaaatgagatcttaatttaaactttacatcttttaagacc 26935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 449175 - 449242
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttttaaga 291  Q
    ||||||||||||| ||| |||  ||||||||||||||  ||||||| |||||||||| |||||||||||    
T  449175 ttttaataaaaag-tgatgtgaacccatttaagaatggggtcttaagttagaccttggatcttttaaga 449242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 9976740 - 9976802
Alignment:
Q  223 ttttaataaaaaggtgacgtgggcccatttaagaatgtagtcttaatttagaccttgcatcttt 286  Q
    ||||||||||||| |||  ||| ||||||||||||||  |||||||||||||||||| ||||||    
T  9976740 ttttaataaaaag-tgatatggacccatttaagaatgaggtcttaatttagaccttggatcttt 9976802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University