View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1023_low_7 (Length: 396)

Name: NF1023_low_7
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1023_low_7
NF1023_low_7
[»] chr7 (4 HSPs)
chr7 (67-341)||(21906689-21906973)
chr7 (339-389)||(21906606-21906656)
chr7 (216-330)||(45429256-45429370)
chr7 (10-40)||(21906975-21907005)
[»] chr5 (2 HSPs)
chr5 (13-138)||(29784943-29785068)
chr5 (215-302)||(32892009-32892096)
[»] chr4 (2 HSPs)
chr4 (215-331)||(31052981-31053097)
chr4 (254-328)||(37538113-37538187)
[»] chr3 (2 HSPs)
chr3 (215-337)||(35970436-35970558)
chr3 (282-331)||(26848415-26848464)
[»] chr8 (1 HSPs)
chr8 (209-335)||(10172406-10172532)
[»] chr6 (2 HSPs)
chr6 (254-336)||(2428031-2428112)
chr6 (254-315)||(24766035-24766096)
[»] chr1 (3 HSPs)
chr1 (257-331)||(48252413-48252487)
chr1 (216-302)||(35120131-35120217)
chr1 (209-302)||(51587373-51587464)
[»] chr2 (4 HSPs)
chr2 (216-341)||(1465743-1465868)
chr2 (254-295)||(15756263-15756304)
chr2 (187-240)||(1465838-1465891)
chr2 (254-302)||(27671330-27671378)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 67 - 341
Target Start/End: Complemental strand, 21906973 - 21906689
Alignment:
Q  67 ttctagcatatgttgcatatatcttcttccatttgaaaactcatcgaaaaatatttgatgcacaagaggttattactaattatgtaatttcaca------ 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  21906973 ttctagcatacgttgcatatatcttcttccatttgaaaactcatcgaaaaatatttgatgcacaagaggttattactaattatgtaatttcacatttgag 21906874  T
Q  161 ----attgtatattgatgtataccaaaggatttaattagtatcctatatcattgtacgattatcttacacatgcatccaatgatactttgctatgttaat 256  Q
        |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||    
T  21906873 cacaattgtatattgatgtataccaaaggatttaattagtatactctatcattgtacgattatcttacacatgcatctaatgatactttactatgtcaat 21906774  T
Q  257 taatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcatagaatgcatgtgtaaagtaatcgtac 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21906773 taatgaatatgaaaacacataagttgtcatattaattaattgatgtatcatcacatcatagaatgtatgtgtaaagtaatcgtac 21906689  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 21906656 - 21906606
Alignment:
Q  339 taccaaaatataattgtaagataaatgtaaccacttaattgagtattatct 389  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21906656 taccaaaatagaattgtaagataaatgtaaccacttaattgagtattatct 21906606  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 45429370 - 45429256
Alignment:
Q  216 ttatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcat 315  Q
    |||| ||||||||||||| ||||||   |||| |||| |||||||||||||||||| | || || | ||| ||| ||||||||| ||| || ||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacgtagcaacacatcat 45429271  T
Q  316 agaatgcatgtgtaa 330  Q
     | ||||||||||||    
T  45429270 tggatgcatgtgtaa 45429256  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 21907005 - 21906975
Alignment:
Q  10 attattctatggccaattttactcttcaatt 40  Q
    |||||||||||||||||||||||||||||||    
T  21907005 attattctatggccaattttactcttcaatt 21906975  T

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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 29785068 - 29784943
Alignment:
Q  13 attctatggccaattttactcttcaattgtcaagagcaagcagtgttgtcatgcttctagcatatgttgcatatatcttcttccatttgaaaactcatcg 112  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  29785068 attctattgccaattctactcttcaattgtcaagagctagcagtgttgttatgcttctagcatatgtttcatatatcttcttccaattgaaaactcatcg 29784969  T
Q  113 aaaaatatttgatgcacaagaggtta 138  Q
    ||||||||||||||||||||||||||    
T  29784968 aaaaatatttgatgcacaagaggtta 29784943  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 32892009 - 32892096
Alignment:
Q  215 attatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgt 302  Q
    ||||| ||||||||||||||||| ||   |||   | ||||||||||||||||||||||||| |||| || |||| ||| ||||||||    
T  32892009 attattttacacatgcatccaataatttattgtcgtattaattaatgaatatgaaaacacatgagttgtcgtattcattgattgatgt 32892096  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 331
Target Start/End: Complemental strand, 31053097 - 31052981
Alignment:
Q  215 attatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatca 314  Q
    ||||| ||||||||||||||||||||   |||    || ||||||||||||||||||||||  |||| ||||||| |||||| |||||| || |||| ||    
T  31053097 attattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaacacacgagttgtcatattcattaatcgatgtagcaacacaaca 31052998  T
Q  315 tagaatgcatgtgtaaa 331  Q
    | | |||||||||||||    
T  31052997 ttggatgcatgtgtaaa 31052981  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 37538113 - 37538187
Alignment:
Q  254 aattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcatagaatgcatgtgt 328  Q
    |||||||||||||||||||| || |||| ||  ||| ||||||||||||  || |||||| | ||||||||||||    
T  37538113 aattaatgaatatgaaaacatatgagttgtcgcattcattaattgatgtcgcaacacatcgttgaatgcatgtgt 37538187  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 35970558 - 35970436
Alignment:
Q  215 attatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatca 314  Q
    ||||| || |||| |||||||||||||  |||  | || ||||||| ||||||||||||||||||   ||||||| ||||||||| ||  || ||||| |    
T  35970558 attattttgcacacgcatccaatgatatgttgtcacgtcaattaataaatatgaaaacacataagccgtcatattcattaattgacgtgacaacacatga 35970459  T
Q  315 tagaatgcatgtgtaaagtaatc 337  Q
    | ||||||||||||||| |||||    
T  35970458 ttgaatgcatgtgtaaaataatc 35970436  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 26848464 - 26848415
Alignment:
Q  282 atcatattaattaattgatgtatcatcacatcatagaatgcatgtgtaaa 331  Q
    |||||||| |||||||||||| ||| |||||||| | |||||||||||||    
T  26848464 atcatattcattaattgatgtttcaacacatcattggatgcatgtgtaaa 26848415  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 335
Target Start/End: Complemental strand, 10172532 - 10172406
Alignment:
Q  209 tgtacgattatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatc 308  Q
    ||||| ||||| ||||||||||||| |||||| | |||  | || ||||| ||||||||| ||| |||| ||| ||| ||| ||||||||| ||| || |    
T  10172532 tgtacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaattgacgtaacaac 10172433  T
Q  309 acatcatagaatgcatgtgtaaagtaa 335  Q
    |||| || | ||| |||||||||||||    
T  10172432 acattatcggatgtatgtgtaaagtaa 10172406  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 2428112 - 2428031
Alignment:
Q  254 aattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcatagaatgcatgtgtaaagtaat 336  Q
    ||||||||||||||||||||| ||| || ||||||| ||||||||||||   | |||||||||  ||||||||||||| ||||    
T  2428112 aattaatgaatatgaaaacacttaa-ttgtcatattcattaattgatgtgataacacatcataagatgcatgtgtaaaataat 2428031  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 24766096 - 24766035
Alignment:
Q  254 aattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcat 315  Q
    ||||||| |||||||||||||||  ||| ||||||| ||||||||||||  || ||||||||    
T  24766096 aattaataaatatgaaaacacatgcgttgtcatattcattaattgatgtggcaacacatcat 24766035  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 48252487 - 48252413
Alignment:
Q  257 taatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcatagaatgcatgtgtaaa 331  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||||   | |||||||| ||||| |||||||||    
T  48252487 taataaatatgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaa 48252413  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 35120217 - 35120131
Alignment:
Q  216 ttatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgt 302  Q
    |||| ||||||||||||||||||||   |||| |||| ||||||| |||| || ||| | || ||| ||||||| ||||||||||||    
T  35120217 ttattttacacatgcatccaatgatgtattgccatgtcaattaataaatacgacaactcgtatgttttcatattcattaattgatgt 35120131  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 51587373 - 51587464
Alignment:
Q  209 tgtacgattatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgt 302  Q
    ||||| ||||| ||||||||||||| ||  ||   |||||| || ||||||||||||||||||||||| ||||  |||||  ||||||||||||    
T  51587373 tgtacaattattttacacatgcatcaaacaatgtgttgctacgtcaattaatgaatatgaaaacacatgagttgacatat--attaattgatgt 51587464  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 1465743 - 1465868
Alignment:
Q  216 ttatcttacacatgcatccaatgatactttgctatgttaattaatgaatatgaaaacacataagttatcatattaattaattgatgtatcatcacatcat 315  Q
    |||| ||||||||||||||||||||   |||  | || ||||||| ||||||||||||||  |||| ||||||| || || ||||||   | ||||||||    
T  1465743 ttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaaacacatcat 1465842  T
Q  316 agaatgcatgtgtaaagtaatcgtac 341  Q
     | ||||||||||||| |||| ||||    
T  1465843 tggatgcatgtgtaaaataattgtac 1465868  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 15756263 - 15756304
Alignment:
Q  254 aattaatgaatatgaaaacacataagttatcatattaattaa 295  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  15756263 aattaatgaatatgaaaacacataagttctcatattcattaa 15756304  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 1465891 - 1465838
Alignment:
Q  187 tttaattagtatcctatatcattgtacgattatcttacacatgcatccaatgat 240  Q
    |||||||||||| ||  |||| ||||| ||||| ||||||||||||||||||||    
T  1465891 tttaattagtatactcgatcagtgtacaattattttacacatgcatccaatgat 1465838  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 27671378 - 27671330
Alignment:
Q  254 aattaatgaatatgaaaacacataagttatcatattaattaattgatgt 302  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||||| ||||    
T  27671378 aattaatgaatatgaaagcacatgagttattatattcattaatttatgt 27671330  T

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