View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1024-Insertion-1 (Length: 414)

Name: NF1024-Insertion-1
Description: NF1024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1024-Insertion-1
NF1024-Insertion-1
[»] chr3 (29 HSPs)
chr3 (8-259)||(3117257-3117508)
chr3 (267-318)||(54244854-54244905)
chr3 (272-318)||(8034261-8034307)
chr3 (267-318)||(14242640-14242691)
chr3 (267-318)||(38834333-38834384)
chr3 (267-318)||(53176024-53176075)
chr3 (267-317)||(10695682-10695732)
chr3 (268-318)||(39625629-39625679)
chr3 (272-318)||(45906328-45906374)
chr3 (267-316)||(26407140-26407189)
chr3 (267-318)||(40690786-40690837)
chr3 (267-318)||(50516950-50517001)
chr3 (267-318)||(52722332-52722383)
chr3 (273-315)||(4970843-4970885)
chr3 (267-318)||(10476106-10476157)
chr3 (267-318)||(24596489-24596540)
chr3 (267-318)||(38572648-38572699)
chr3 (267-318)||(43171852-43171903)
chr3 (267-318)||(52553597-52553648)
chr3 (378-414)||(10476002-10476038)
chr3 (378-414)||(10695798-10695834)
chr3 (378-414)||(38834451-38834487)
chr3 (378-414)||(39625528-39625564)
chr3 (378-414)||(45906230-45906266)
chr3 (383-414)||(50517058-50517089)
chr3 (378-414)||(14242754-14242790)
chr3 (378-414)||(24656920-24656956)
chr3 (378-414)||(38572763-38572799)
chr3 (378-414)||(43171750-43171786)
[»] chr7 (30 HSPs)
chr7 (267-318)||(7118026-7118077)
chr7 (272-318)||(44074032-44074078)
chr7 (267-315)||(7834977-7835025)
chr7 (267-318)||(3175869-3175920)
chr7 (267-318)||(6587465-6587516)
chr7 (267-318)||(19893366-19893417)
chr7 (267-318)||(27895356-27895407)
chr7 (267-318)||(29666245-29666296)
chr7 (267-318)||(46940299-46940350)
chr7 (267-317)||(38150665-38150715)
chr7 (267-318)||(1783833-1783884)
chr7 (267-318)||(16188859-16188910)
chr7 (267-318)||(23979785-23979836)
chr7 (275-318)||(28147329-28147372)
chr7 (267-318)||(47748791-47748842)
chr7 (272-318)||(38098226-38098272)
chr7 (267-318)||(32801511-32801562)
chr7 (267-318)||(36332873-36332924)
chr7 (378-414)||(19893480-19893516)
chr7 (378-414)||(28147228-28147264)
chr7 (378-414)||(38098343-38098379)
chr7 (378-414)||(38150563-38150599)
chr7 (378-414)||(44073930-44073966)
chr7 (384-414)||(32801632-32801662)
chr7 (378-414)||(1783732-1783768)
chr7 (378-414)||(6587582-6587618)
chr7 (378-414)||(16188975-16189011)
chr7 (378-414)||(29666142-29666178)
chr7 (378-414)||(36332990-36333026)
chr7 (378-414)||(47748908-47748944)
[»] chr4 (21 HSPs)
chr4 (267-318)||(53227862-53227913)
chr4 (272-318)||(48832773-48832819)
chr4 (267-318)||(1121198-1121249)
chr4 (267-318)||(1124034-1124085)
chr4 (267-318)||(6891245-6891296)
chr4 (267-318)||(13229508-13229559)
chr4 (267-318)||(21629697-21629748)
chr4 (267-318)||(50436095-50436146)
chr4 (267-318)||(56038356-56038407)
chr4 (272-318)||(46580544-46580590)
chr4 (267-318)||(28714554-28714605)
chr4 (267-318)||(32129533-32129584)
chr4 (272-318)||(26619445-26619491)
chr4 (267-318)||(575755-575806)
chr4 (378-414)||(26619339-26619375)
chr4 (378-414)||(46580464-46580500)
chr4 (378-414)||(53227966-53228002)
chr4 (267-317)||(43100270-43100320)
chr4 (378-414)||(575875-575911)
chr4 (378-414)||(28714475-28714511)
chr4 (378-414)||(50435995-50436031)
[»] chr8 (24 HSPs)
chr8 (267-318)||(10334463-10334514)
chr8 (267-318)||(21405595-21405646)
chr8 (267-318)||(21800087-21800138)
chr8 (267-318)||(26426649-26426700)
chr8 (267-318)||(29601007-29601058)
chr8 (267-318)||(33817382-33817433)
chr8 (267-318)||(37233763-37233814)
chr8 (267-318)||(4079013-4079064)
chr8 (267-318)||(10953465-10953516)
chr8 (267-318)||(10961470-10961521)
chr8 (267-318)||(34500962-34501013)
chr8 (267-312)||(33317997-33318042)
chr8 (378-414)||(21405711-21405747)
chr8 (378-414)||(21800203-21800239)
chr8 (378-414)||(26426768-26426804)
chr8 (378-414)||(29601123-29601159)
chr8 (267-318)||(10582341-10582392)
chr8 (272-315)||(14123091-14123134)
chr8 (275-308)||(14121777-14121810)
chr8 (378-414)||(10953570-10953606)
chr8 (378-414)||(10961575-10961611)
chr8 (386-414)||(14122251-14122279)
chr8 (386-414)||(33817506-33817534)
chr8 (378-414)||(37233664-37233700)
[»] chr6 (5 HSPs)
chr6 (267-318)||(14206856-14206907)
chr6 (267-318)||(23219289-23219340)
chr6 (272-318)||(4486501-4486547)
chr6 (267-318)||(31715619-31715670)
chr6 (383-414)||(23219410-23219441)
[»] chr5 (10 HSPs)
chr5 (267-318)||(3514189-3514240)
chr5 (267-318)||(19857991-19858042)
chr5 (267-318)||(21145598-21145649)
chr5 (267-318)||(25764077-25764128)
chr5 (272-317)||(794771-794816)
chr5 (272-318)||(22527329-22527375)
chr5 (378-414)||(3466504-3466540)
chr5 (385-414)||(794685-794714)
chr5 (386-414)||(19858115-19858143)
chr5 (378-414)||(21145713-21145749)
[»] chr2 (19 HSPs)
chr2 (267-318)||(4391921-4391972)
chr2 (267-318)||(45463424-45463475)
chr2 (272-318)||(16492695-16492741)
chr2 (272-318)||(28439661-28439707)
chr2 (267-316)||(5003333-5003382)
chr2 (267-318)||(12131254-12131305)
chr2 (267-318)||(15381685-15381736)
chr2 (267-318)||(25459352-25459403)
chr2 (267-318)||(34599445-34599496)
chr2 (378-414)||(4391841-4391877)
chr2 (378-414)||(5003446-5003482)
chr2 (378-414)||(45463539-45463575)
chr2 (383-414)||(12131372-12131403)
chr2 (267-314)||(38903633-38903680)
chr2 (384-414)||(16492593-16492623)
chr2 (378-414)||(15381804-15381840)
chr2 (378-414)||(25459469-25459505)
chr2 (378-414)||(28439775-28439811)
chr2 (378-414)||(34599563-34599599)
[»] chr1 (15 HSPs)
chr1 (267-318)||(13832931-13832982)
chr1 (267-318)||(29824473-29824524)
chr1 (267-318)||(37350404-37350455)
chr1 (267-318)||(40535773-40535824)
chr1 (267-318)||(40976885-40976936)
chr1 (274-318)||(31924760-31924804)
chr1 (267-318)||(7351173-7351224)
chr1 (267-318)||(42434411-42434462)
chr1 (272-318)||(9412226-9412272)
chr1 (378-414)||(13832850-13832886)
chr1 (378-414)||(37350499-37350535)
chr1 (383-414)||(9412125-9412156)
chr1 (378-414)||(31924655-31924691)
chr1 (386-414)||(40535671-40535699)
chr1 (378-414)||(42434527-42434563)
[»] scaffold0054 (2 HSPs)
scaffold0054 (267-318)||(30647-30698)
scaffold0054 (378-414)||(30547-30583)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 3117508 - 3117257
Alignment:
Q  8 ttttcttgtcactcacgttcaatagcacaccgacannnnnnnctaataaaagtcattcatatgagagtgatgcatctgttattgtttttgcatgaccaaa 107  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  3117508 ttttcttgtcactcacgttcaatagcacaccgacatttttttctaataaaagtcattcatatgag--tgatgcatctgttattgtttttgaatgaccaaa 3117411  T
Q  108 attggaagtttcttagtttttggcatatgag--taattgagtcaatacttttgatgtcatcttcacaaaaaataggctttgctatgttttttctccccaa 205  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3117410 attggaagtttcgtagtttttggcatatgagagtaattgagtcaatgcttttgatgtcatcttcacaaaaaataggctttgctatgttttttctccccaa 3117311  T
Q  206 gttattagggaaaaagtggaaagcacattttggggtggaccaaaattttcatgg 259  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  3117310 gttattagggaaaaagtggaaaacacattttggtgtggaccaaaattttcatgg 3117257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 54244854 - 54244905
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54244854 cagggccgtcttaacaaattcataggtccggttttaattttataagggatgc 54244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 8034261 - 8034307
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8034261 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 8034307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 14242640 - 14242691
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  14242640 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 14242691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 38834333 - 38834384
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  38834333 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 38834384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 53176075 - 53176024
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  53176075 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 53176024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 10695682 - 10695732
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatg 317  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  10695682 cagggccgtcttaacaaattcataggcccggttttaattttataagggatg 10695732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 39625679 - 39625629
Alignment:
Q  268 aggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  39625679 aggaccgtcttaacaaattcaaaggcccggttttaattttataagggatgc 39625629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 45906374 - 45906328
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  45906374 ccgtcttaacaaattcataggtccggttttaattttataaaggatgc 45906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 26407189 - 26407140
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggat 316  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  26407189 cagggccgtcttaacaaattcataggcccggttttaattttataagggat 26407140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 40690837 - 40690786
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40690837 cagggccgtcttaacaaattcataggcccgattttaattttataagggatgc 40690786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 50516950 - 50517001
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  50516950 cagggccgtcttaacaaattcatagatccgattttaattttataagggatgc 50517001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 52722332 - 52722383
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  52722332 cagggccgtcttaacaaattcataggcccagttttaattttataagggatgc 52722383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 4970843 - 4970885
Alignment:
Q  273 cgtcttaacaaattcataggtccggttttaattttataaggga 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  4970843 cgtcttaacaaattcataggttcggttttaattttataaggga 4970885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 10476157 - 10476106
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  10476157 cagggccgtcataataaattcataggcccggttttaattttataagggatgc 10476106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 24596540 - 24596489
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  24596540 cagggccgtcttaacaaatttataggtccgattttaattctataagggatgc 24596489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 38572648 - 38572699
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||  || ||||||||||||||||||||||    
T  38572648 cagggccgtcttaacaaattcatagtccccgttttaattttataagggatgc 38572699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 43171903 - 43171852
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  43171903 caggatcgtcttaacaaatttataggcccgattttaattttataagggatgc 43171852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 52553648 - 52553597
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||  ||||||||||||||||||||    
T  52553648 cagggccgtcttaacaaattcataggcccgactttaattttataagggatgc 52553597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 10476038 - 10476002
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10476038 tcacactttggtgggtcttgaacacatgacctcacac 10476002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 10695798 - 10695834
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10695798 tcacactttggtgggtcttgaacacatgacctcacac 10695834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 38834451 - 38834487
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38834451 tcacactttggtgggtcttgaacacatgacctcacac 38834487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 39625564 - 39625528
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39625564 tcacactttggtgggtcttgaacacatgacctcacac 39625528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 45906266 - 45906230
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  45906266 tcacactttggtgggtcttgaacacatgacctcacac 45906230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Original strand, 50517058 - 50517089
Alignment:
Q  383 ctttggtgggtcttgaacacatgacctcacac 414  Q
    ||||||||||||||||||||||||||||||||    
T  50517058 ctttggtgggtcttgaacacatgacctcacac 50517089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 14242754 - 14242790
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  14242754 tcacacttttgtgggtcttgaacacatgacctcacac 14242790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 24656920 - 24656956
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||||||||||| |||||||||||||||||||    
T  24656920 tcacactttggtgggtcatgaacacatgacctcacac 24656956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 38572763 - 38572799
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  38572763 tcacacttttgtgggtcttgaacacatgacctcacac 38572799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 43171786 - 43171750
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  43171786 tcacacttttgtgggtcttgaacacatgacctcacac 43171750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 7118026 - 7118077
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118026 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 7118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 44074078 - 44074032
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44074078 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 44074032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 7834977 - 7835025
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataaggga 315  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7834977 cagggccgtcttaacaaattcataggtccggttttaattttataaggga 7835025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 3175869 - 3175920
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  3175869 cagggccgtcttaacaaattcataggtccggttttaattttataaaggatgc 3175920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 6587465 - 6587516
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6587465 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 6587516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 19893366 - 19893417
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19893366 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 19893417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 27895407 - 27895356
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  27895407 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 27895356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 29666296 - 29666245
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29666296 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 29666245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 46940350 - 46940299
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  46940350 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 46940299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 38150715 - 38150665
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatg 317  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38150715 cagggccgtcttaacaaattcataggcccggttttaattttataagggatg 38150665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 1783884 - 1783833
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  1783884 cagggccgtcttaacaaattcatagacccggttttaattttataagggatgc 1783833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 16188859 - 16188910
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  16188859 cagggccgtcttaacaaattcataggcccggttttaattttataagagatgc 16188910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 23979785 - 23979836
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  23979785 caggaccgtcttaacaaattcataggctcagttttaattttataagggatgc 23979836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 28147372 - 28147329
Alignment:
Q  275 tcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  28147372 tcttaacaaattcataggcccggttttaattttataagggatgc 28147329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 47748791 - 47748842
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  47748791 cagggccgtcttaacaaattcataggcccggttttaattttataagagatgc 47748842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 38098226 - 38098272
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||    
T  38098226 ccgttttaacaaattcataggcccggttttaattttataagggatgc 38098272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 32801511 - 32801562
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||| |||||||||||||||| |||||||||||||||||| ||||||    
T  32801511 cagggccgttttaacaaattcataggcccggttttaattttataaaggatgc 32801562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 36332873 - 36332924
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||| |||||    
T  36332873 cagggccgtcttaacaaattcatagacccggttttaattttataagagatgc 36332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 19893480 - 19893516
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19893480 tcacactttggtgggtcttgaacacatgacctcacac 19893516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 28147264 - 28147228
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28147264 tcacactttggtgggtcttgaacacatgacctcacac 28147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 38098343 - 38098379
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38098343 tcacactttggtgggtcttgaacacatgacctcacac 38098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 38150599 - 38150563
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38150599 tcacactttggtgggtcttgaacacatgacctcacac 38150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 44073966 - 44073930
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  44073966 tcacactttggtgggtcttgaacacatgacctcacac 44073930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 414
Target Start/End: Original strand, 32801632 - 32801662
Alignment:
Q  384 tttggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||||    
T  32801632 tttggtgggtcttgaacacatgacctcacac 32801662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 1783768 - 1783732
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  1783768 tcacacttttgtgggtcttgaacacatgacctcacac 1783732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 6587582 - 6587618
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||||||| |||||||||||||||||||||||    
T  6587582 tcacactttggtgagtcttgaacacatgacctcacac 6587618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 16188975 - 16189011
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  16188975 tcacacttttgtgggtcttgaacacatgacctcacac 16189011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 29666178 - 29666142
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29666178 tcacacttttgtgggtcttgaacacatgacctcacac 29666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 36332990 - 36333026
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  36332990 tcacacttttgtgggtcttgaacacatgacctcacac 36333026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 47748908 - 47748944
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  47748908 tcacactttggtggatcttgaacacatgacctcacac 47748944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 53227862 - 53227913
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53227862 cagggccgtcttaacaaattcataggtccggttttaattttataagggatgc 53227913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 48832773 - 48832819
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48832773 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 48832819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 1121198 - 1121249
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  1121198 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 1121249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 1124034 - 1124085
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  1124034 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 1124085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 6891296 - 6891245
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6891296 cagggccgtcttaacaaatttataggtccggttttaattttataagggatgc 6891245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 13229508 - 13229559
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  13229508 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 13229559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 21629748 - 21629697
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  21629748 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 21629697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 50436146 - 50436095
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  50436146 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 50436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 56038407 - 56038356
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  56038407 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 56038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 46580590 - 46580544
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  46580590 ccgtcttaacaaattcataggcccggttttaattttataagggatgc 46580544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 28714605 - 28714554
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  28714605 cagggccgtcttaataaattcataggtccgattttaattttataagggatgc 28714554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 32129584 - 32129533
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32129584 cagggccgtcttaacaaattcataggcccggttttaattttataaaggatgc 32129533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 26619491 - 26619445
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  26619491 ccgtcttaacaaattcataggcccggttttaattttataaaggatgc 26619445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 575755 - 575806
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  575755 cagggccgtcttaacaaattaataggcccggttttaattttgtaagggatgc 575806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 26619375 - 26619339
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  26619375 tcacactttggtgggtcttgaacacatgacctcacac 26619339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 46580500 - 46580464
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  46580500 tcacactttggtgggtcttgaacacatgacctcacac 46580464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 53227966 - 53228002
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  53227966 tcacactttggtgggtcttgaacacatgacctcacac 53228002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 43100270 - 43100320
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatg 317  Q
    |||| ||||||||||||||||||||| ||  |||||||||||||| |||||    
T  43100270 cagggccgtcttaacaaattcataggcccaattttaattttataaaggatg 43100320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 575875 - 575911
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  575875 tcacactttggtggatcttgaacacatgacctcacac 575911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 28714511 - 28714475
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  28714511 tcacactttggtggatcttgaacacatgacctcacac 28714475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 50436031 - 50435995
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  50436031 tcacacttttgtgggtcttgaacacatgacctcacac 50435995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 10334463 - 10334514
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  10334463 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 10334514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 21405595 - 21405646
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  21405595 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 21405646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 21800087 - 21800138
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  21800087 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 21800138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 26426649 - 26426700
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  26426649 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 26426700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 29601007 - 29601058
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29601007 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 29601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 33817382 - 33817433
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33817382 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 33817433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 37233814 - 37233763
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  37233814 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 37233763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 4079064 - 4079013
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  4079064 cagggccgtcttaacaaattcataggcccggttttaattttgtaagggatgc 4079013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 10953465 - 10953516
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10953465 cagggccgtcttaataaattcataggcccggttttaattttataagggatgc 10953516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 10961470 - 10961521
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10961470 cagggccgtcttaataaattcataggcccggttttaattttataagggatgc 10961521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 34500962 - 34501013
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  34500962 cagggccgtcttaacaaattcataggcccggttttaattttataagagatgc 34501013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 33318042 - 33317997
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataag 312  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||    
T  33318042 cagggccgtcttaacaaattcgtaggcccggttttaattttataag 33317997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 21405711 - 21405747
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21405711 tcacactttggtgggtcttgaacacatgacctcacac 21405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 21800203 - 21800239
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21800203 tcacactttggtgggtcttgaacacatgacctcacac 21800239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 26426768 - 26426804
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  26426768 tcacactttggtgggtcttgaacacatgacctcacac 26426804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 29601123 - 29601159
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29601123 tcacactttggtgggtcttgaacacatgacctcacac 29601159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 10582392 - 10582341
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||   | ||||||||||||||||||||||    
T  10582392 cagggccgtcttaacaaattcatagtctccgttttaattttataagggatgc 10582341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 14123091 - 14123134
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataaggga 315  Q
    |||||||||||||||||||||   ||||||||||||||||||||    
T  14123091 ccgtcttaacaaattcataggcttggttttaattttataaggga 14123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 14121777 - 14121810
Alignment:
Q  275 tcttaacaaattcataggtccggttttaatttta 308  Q
    |||||||||||||||||| |||||||||||||||    
T  14121777 tcttaacaaattcataggcccggttttaatttta 14121810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 10953570 - 10953606
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  10953570 tcacacttttgtgggtcttgaacacatgacctcacac 10953606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 10961575 - 10961611
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  10961575 tcacacttttgtgggtcttgaacacatgacctcacac 10961611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 14122251 - 14122279
Alignment:
Q  386 tggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||    
T  14122251 tggtgggtcttgaacacatgacctcacac 14122279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 33817506 - 33817534
Alignment:
Q  386 tggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||    
T  33817506 tggtgggtcttgaacacatgacctcacac 33817534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 37233700 - 37233664
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  37233700 tcacacttttgtgggtcttgaacacatgacctcacac 37233664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 14206907 - 14206856
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  14206907 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 14206856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 23219289 - 23219340
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  23219289 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 23219340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 4486501 - 4486547
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4486501 ccgtcttaacaaattcataggcccggttttaattttataagggatgc 4486547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 31715670 - 31715619
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31715670 cagggccgtcttaacaaattcataggcccggttttaattttataaggaatgc 31715619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Original strand, 23219410 - 23219441
Alignment:
Q  383 ctttggtgggtcttgaacacatgacctcacac 414  Q
    ||||||||||||||||||||||||||||||||    
T  23219410 ctttggtgggtcttgaacacatgacctcacac 23219441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 3514189 - 3514240
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  3514189 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 3514240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 19857991 - 19858042
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19857991 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 19858042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 21145598 - 21145649
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  21145598 caggcccgtcttaacaaattcataggcccggttttaattttataagggatgc 21145649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 25764077 - 25764128
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  25764077 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 25764128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 794816 - 794771
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatg 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  794816 ccgtcttaacaaattcataggtctggttttaattttataagggatg 794771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 22527329 - 22527375
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||    
T  22527329 ccgttttaacaaattcataggcccggttttaattttataagggatgc 22527375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 3466540 - 3466504
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3466540 tcacactttggtgggtcttgaacacatgacctcacac 3466504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 794714 - 794685
Alignment:
Q  385 ttggtgggtcttgaacacatgacctcacac 414  Q
    ||||||||||||||||||||||||||||||    
T  794714 ttggtgggtcttgaacacatgacctcacac 794685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 19858115 - 19858143
Alignment:
Q  386 tggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||    
T  19858115 tggtgggtcttgaacacatgacctcacac 19858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 21145713 - 21145749
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  21145713 tcacacttttgtgggtcttgaacacatgacctcacac 21145749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 4391972 - 4391921
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4391972 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 4391921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 45463424 - 45463475
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  45463424 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 45463475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 16492741 - 16492695
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  16492741 ccgtcttaacaaattcataggcccggttttaattttataagggatgc 16492695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 28439661 - 28439707
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  28439661 ccgtcttaacaaattcataggcccggttttaattttataagggatgc 28439707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 5003333 - 5003382
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggat 316  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  5003333 cagggccgtcttaacaaattcataggtccagttttaattttataagggat 5003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 12131254 - 12131305
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  12131254 cagggccgtcttaacaaattcataggcccagttttaattttataagggatgc 12131305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 15381685 - 15381736
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  15381685 cagggccgtcttaaaaaattcataggcccggttttaattttataagggatgc 15381736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 25459352 - 25459403
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  25459352 cagggccgtcttaacaaattcataggcccggttttaattttataaaggatgc 25459403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 34599445 - 34599496
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  34599445 cagggccgtcttaacaaattcataggcccggttttaattatataagggatgc 34599496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 4391877 - 4391841
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4391877 tcacactttggtgggtcttgaacacatgacctcacac 4391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 5003446 - 5003482
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5003446 tcacactttggtgggtcttgaacacatgacctcacac 5003482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 45463539 - 45463575
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  45463539 tcacactttggtgggtcttgaacacatgacctcacac 45463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Original strand, 12131372 - 12131403
Alignment:
Q  383 ctttggtgggtcttgaacacatgacctcacac 414  Q
    ||||||||||||||||||||||||||||||||    
T  12131372 ctttggtgggtcttgaacacatgacctcacac 12131403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 38903680 - 38903633
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataaggg 314  Q
    |||| ||||||||| |||||||||||  ||||||||||||||||||||    
T  38903680 cagggccgtcttaataaattcataggcacggttttaattttataaggg 38903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 414
Target Start/End: Complemental strand, 16492623 - 16492593
Alignment:
Q  384 tttggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||||    
T  16492623 tttggtgggtcttgaacacatgacctcacac 16492593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 15381804 - 15381840
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  15381804 tcacacttttgtgggtcttgaacacatgacctcacac 15381840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 25459469 - 25459505
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  25459469 tcacacttttgtgggtcttgaacacatgacctcacac 25459505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 28439775 - 28439811
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  28439775 tcacactttggtggatcttgaacacatgacctcacac 28439811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 34599563 - 34599599
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||||||||||||||||||||| |||||||||    
T  34599563 tcacactttggtgggtcttgaacacataacctcacac 34599599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 13832982 - 13832931
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  13832982 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 13832931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 29824524 - 29824473
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29824524 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 29824473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 37350404 - 37350455
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  37350404 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 37350455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 40535824 - 40535773
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  40535824 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 40535773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 40976885 - 40976936
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  40976885 cagggccgtcttaacaaattcataggcccggttttaattttataagggatgc 40976936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 31924804 - 31924760
Alignment:
Q  274 gtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  31924804 gtcttaacaaattcataggcccggttttaattttataagggatgc 31924760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 7351173 - 7351224
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  7351173 cagggccgtcttaacaaattcataggctcggttttaattttataagggatgc 7351224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 42434411 - 42434462
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||||||||||||||||||||||| | ||| ||||||||||| |||||||||    
T  42434411 caggaccgtcttaacaaattcatacgcccgattttaattttacaagggatgc 42434462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 9412272 - 9412226
Alignment:
Q  272 ccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  9412272 ccgtcttaacaaattcataggcccaattttaattttataagggatgc 9412226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 13832886 - 13832850
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  13832886 tcacactttggtgggtcttgaacacatgacctcacac 13832850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 37350499 - 37350535
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||||||||||||||||||||||||||||||    
T  37350499 tcacactttggtgggtcttgaacacatgacctcacac 37350535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 9412156 - 9412125
Alignment:
Q  383 ctttggtgggtcttgaacacatgacctcacac 414  Q
    ||||||||||||||||||||||||||||||||    
T  9412156 ctttggtgggtcttgaacacatgacctcacac 9412125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 31924691 - 31924655
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||||||| |||||||||||||||||||||||    
T  31924691 tcacactttggtgagtcttgaacacatgacctcacac 31924655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 40535699 - 40535671
Alignment:
Q  386 tggtgggtcttgaacacatgacctcacac 414  Q
    |||||||||||||||||||||||||||||    
T  40535699 tggtgggtcttgaacacatgacctcacac 40535671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 42434527 - 42434563
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| |||| |||||||||||||||||||||||||||    
T  42434527 tcacacttttgtgggtcttgaacacatgacctcacac 42434563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 30698 - 30647
Alignment:
Q  267 caggaccgtcttaacaaattcataggtccggttttaattttataagggatgc 318  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  30698 cagggccgtcttaacaaattcatagatctggttttaattttataagggatgc 30647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 30583 - 30547
Alignment:
Q  378 tcacgctttggtgggtcttgaacacatgacctcacac 414  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30583 tcacactttgatgggtcttgaacacatgacctcacac 30547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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