View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10240_1 (Length: 531)
Name: NF10240_1
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Original strand, 30517410 - 30517909
Alignment:
| Q |
13 |
aatattcacaaaatattaagtactaataattttatttttattaacaaagaaatattttataactttgtatataaatatgagaagaaacaaagaaaaaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30517410 |
aatattcacaaaatattaagtactaataattttatttttattaacaaagagatattttataacttt----------atgagaagaaacaaagaaaaaatt |
30517499 |
T |
|
| Q |
113 |
tgcttaatgagtttcggttaaggacggattgtttgggataccaagagttcaaatgcagaggaacgatattttatcagactttacttatctc--aactcaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | || || |
|
|
| T |
30517500 |
tgcttaatgagtttcggttaaggacggattgtttgggttaccaagagttcaaatgcaaaggaacga----------gactttacttatctctcagctgaa |
30517589 |
T |
|
| Q |
211 |
ccctttgtgagaatgagaagtctatgaaaaaagattagagctaagaaaagtcaaaatgggagtaagcagtaacatgagtacggcataaggatttgtacaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30517590 |
ccctttgtgagaatgagaagtctatgacaaaagattagagctaacaaaagtcaaaatgggagtaagcagtaacatgagtacggcataaggatttgtacaa |
30517689 |
T |
|
| Q |
311 |
acaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctttagtgagtgaggttaactg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30517690 |
acaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctatagtgagtgaggttaactg |
30517789 |
T |
|
| Q |
411 |
agataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcgaaaaacttgtgtcttaattaatctttgatcaactccttaat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
30517790 |
agataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-aaaaacttgtgtgttaattaatctttgatcaactccttcat |
30517888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University