View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_3 (Length: 474)
Name: NF10240_3
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_3 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 6510385 - 6509939
Alignment:
| Q |
1 |
gaaatgtaaaaagaaaggaagggtgggagaggttgtgatgaagattgatataagtaacgcatatgatagagtttaataggattatctgaaggaaattatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6510385 |
gaaatgtaaaaagaaaggaagggtgggagaggttgtgaggaagattgatataagtaacgcatatgatagagtttaatgggattatctgaaggaaattatg |
6510286 |
T |
|
| Q |
101 |
aggagaatgggtctccatgatattttggtggaatggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagtgagaccta |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510285 |
aggagaatgggtctccatgatattttggtgaaatggatgagtatgtgtatgaacagtgttaattatcaagtgattgttaatggggagagagtgagaccta |
6510186 |
T |
|
| Q |
201 |
ttatcccaaagagaggtcatcgacagggtgacccactgtcaccttatctgttcataatttgtgtggagggtctctctgcacaattaaagaaagctgaagc |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510185 |
ttatcccaaagagaggtcttcgacagggtgacccactgtcaccttatctgttcataatttgtgtggagggtctctctgcacaattaaagaaagctgaagc |
6510086 |
T |
|
| Q |
301 |
gagagtggatattcatggtgtgaagttgtgtcgagaagcactaatcctcacacaccttttatttgctgacgaatgtttcattttttgcaaggcaaatatg |
400 |
Q |
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| T |
6510085 |
gagagtggatattcatggtgtgaagttgtgtcgaggagcactaatcctcacacaccttttatttgctgacgattgtttcattttttgcaaggcaaatatg |
6509986 |
T |
|
| Q |
401 |
caagaaagtataaagttgaaagaaatattacaatcttatgaagctat |
447 |
Q |
| |
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| T |
6509985 |
caagaaagtataaagttgaaagaaatattacaatcttatgaagctat |
6509939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 18980217 - 18979967
Alignment:
| Q |
5 |
tgtaaaaagaaaggaagggtgggagaggttgtgatgaagattgatataagtaacgcatatgatagagtttaataggattatctgaaggaaattatgagga |
104 |
Q |
| |
|
||||||| || ||| | |||||| ||||||| |||||||||| || || || || |||||||||||| | | ||| ||| | ||| || | ||| | | |
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| T |
18980217 |
tgtaaaaggagaggcaaggtgggggaggttgctttgaagattgacatcagcaaagcctatgatagagttgagtgggagtatgtaaagaaagtaatgtgca |
18980118 |
T |
|
| Q |
105 |
gaatgggtctccatgatattttggtggaatggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagtgagacctattat |
204 |
Q |
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|||||||| | ||||||| | ||| ||||||||| |||||||||| | |||| ||| ||||||||| |||| |||| |||||||||| |||| | | |
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| T |
18980117 |
gaatgggttttcatgatagatgggtaaaatggatgactatgtgtatggaaagtggtaactatcaagtgcttgtaaatgaggagagagtgggaccagtcgt |
18980018 |
T |
|
| Q |
205 |
cccaaagagaggtcatcgacagggtgacccactgtcaccttatctgttcat |
255 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||| ||||| |
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|
| T |
18980017 |
tccaaagagaggtttgaggcagggtgacccactgtcaccttatcttttcat |
18979967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 32757870 - 32757786
Alignment:
| Q |
134 |
tggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagtgagacctattatcccaaagagaggtc |
218 |
Q |
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||||||| ||||||||| | |||||||||||||||||| |||||||||| ||||| ||| |||| |||| ||||||||||||| |
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|
| T |
32757870 |
tggatgactatgtgtattgaaagtgttaattatcaagtgcttgttaatggagagagtgtgggaccaattaatccaaagagaggtc |
32757786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 38197616 - 38197523
Alignment:
| Q |
296 |
gaagcgagagtggatattcatggtgtgaagttgtgtcgagaagcactaatcctcacacaccttttatttgctgacgaatgtttcattttttgca |
389 |
Q |
| |
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|||||||||||||| |||||||| | |||| ||||||| | ||| | | |||||||| |||| ||||||||||| || |||||| | ||||||| |
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| T |
38197616 |
gaagcgagagtggacattcatggagggaaggtgtgtcggggagctccactcctcacatacctattatttgctgatgattgtttcttattttgca |
38197523 |
T |
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