View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10240_4 (Length: 451)
Name: NF10240_4
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 337
Target Start/End: Original strand, 29906454 - 29906767
Alignment:
| Q |
24 |
aaaggtaaataatacccaggacaaaagaaacatgaaagaaaagtcaaaaagcaaatagcttccaaggacaacttcaatagttgaaaactattttctgtca |
123 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29906454 |
aaaggtaaataacacccgggacaaaagaaacatgaaagaaaggtcaaaaagcaaatagcttccaaggataacttcaatagttgaaaactattttctgtca |
29906553 |
T |
|
| Q |
124 |
ttttcatgatcttcatcaagcaatgcataaaagcaaggagaatttgaaacagataccattgacaatgatgtgaatgaaaacgtgtatatcttatagcaat |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906554 |
tttttatgatcttcatcaagcaatgcataaaagcaaggagaatttgaaacagataccattgacaatgatgtgaatgaaaacgtgtatatcttatagcaat |
29906653 |
T |
|
| Q |
224 |
agttatccatcaccaacaataaaattggattcaaaatatttttccatcatagcaatcatgttttctgttaagccaaagacaaattaaatccaacaaatga |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
29906654 |
agttatccatcaccgacaataaaattggattcaaaatatttttccatcatagcaatcatgttttctgttaagccaaagataaattaaatccaacaaaaga |
29906753 |
T |
|
| Q |
324 |
ggtagaatgaccat |
337 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29906754 |
ggtagaatgaccat |
29906767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 29906783 - 29906815
Alignment:
| Q |
357 |
tcgaaccaccaataacatggaaattacaggctt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
29906783 |
tcgaaccaccaataacatggaaattacaggctt |
29906815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University