View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_5 (Length: 388)
Name: NF10240_5
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_5 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 7009255 - 7008894
Alignment:
| Q |
12 |
aagaaagcatggacaaagtctccaaatctaagcttatatgccgacaaatcaactgaatctgatgctggagatggccagagaccattcgtggtaacaatac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |
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| T |
7009255 |
aagaaagcatggacaaagtctccaaatctaagcttatatgccgacaaatcaactgaatctgatcccggagatggccagagaccattcatggtaacaatac |
7009156 |
T |
|
| Q |
112 |
catagtgtctctggccatcgcttcctgtgtaactgtcagtgaaggaagtaaaagcacagttgaaaccacaaatgacgaggagaataccacttaggtattt |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009155 |
catagtgtctctggccatcgcttccggtgtaactgtcagtgaaggaagtaaaagcacagttgaaaccacaaatgacgaggagaataccacttaggtattt |
7009056 |
T |
|
| Q |
212 |
gttgatggtgctgcagtgtccattgttggttacaactggactgagatactggaacaagaagaccgtgccggtaggaagaagcttaacgaggtttcctact |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009055 |
gttgatggtgctgcagtgtccattgttggttacaactggactgagatactggaacaagaagaccgtgccggtaggaagaagcttaacgaggtttcctact |
7008956 |
T |
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| Q |
312 |
ccggagaatgtcttccctgtcatggtactagcacctttgttggtgcttgttttggaggatga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7008955 |
ccggagaatgtcttccctgtcatggtactagcacctttgttggtgcttgttttggaggatga |
7008894 |
T |
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