View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_6 (Length: 382)
Name: NF10240_6
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 20988478 - 20988113
Alignment:
| Q |
17 |
agcagcacagattcccaactctaaccctttatacgctggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatc |
116 |
Q |
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|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20988478 |
agcatcaccgattcccaactctaaccctttatacgccggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatc |
20988379 |
T |
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| Q |
117 |
acagtcctcaacagattacacacaatctcagtgatcacaattcttcccctctctttgctaatcaaatcgaacgctaaagagagaaacaaaaacggcacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20988378 |
acagtcctcaacagattacacacaatctcagtgatcacaattcttcccctctctttgctaatcaaatcaaacgctaaagagagaaacaaaaacggcacag |
20988279 |
T |
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| Q |
217 |
gtttgtttttctcccagcaaacaaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20988278 |
gtttgtttttctcccagcaaacaaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgtt |
20988179 |
T |
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| Q |
317 |
ggaagaagatgaagtgttgcggatcttgctcgatggatcttcatgaacggtttcttcgggattttg |
382 |
Q |
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| T |
20988178 |
ggaagaagatgaagtgttgcggatcttgctcgatggatcttcatgaacggtttcttcgggattttg |
20988113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 382
Target Start/End: Complemental strand, 20998700 - 20998345
Alignment:
| Q |
27 |
attcccaactctaaccctttatacgctggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatcacagtcctca |
126 |
Q |
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|||||||| || ||||||| || ||| ||||||||| |||||||||| | ||||||||| || |||||||| || ||||| |||||||||||||| |||| |
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| T |
20998700 |
attcccaattccaacccttcatgcgccggcgcaattctattcgctgataaataaacaacaggcacaagatcttccggtgtagcatgtatcacagttctca |
20998601 |
T |
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| Q |
127 |
acagattacacacaatctcagtgatcacaattcttcccctctctttgctaatcaaatcgaacgctaaagagagaaacaaaaacggcacaggtttgttttt |
226 |
Q |
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||| |||||||||||| |||||||||||||| || || ||||||| | |||||| ||| ||||| ||| |||||||||||||||| |||||||||| ||| |
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| T |
20998600 |
acaaattacacacaatgtcagtgatcacaatcctcccactctcttcgttaatcatatcaaacgccaaacagagaaacaaaaacggaacaggtttgtcttt |
20998501 |
T |
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| Q |
227 |
ctcccagcaaacaaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgttggaagaagat |
326 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||| || || ||||| ||| |
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| T |
20998500 |
ctcccagcaaacaaccgaactcggatcgaaactcgccggtttcttcttcagctgcggaaccttttccttcaattcagcgactattcccttcgaagatgat |
20998401 |
T |
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| Q |
327 |
gaagtgttgcggatcttgctcgatggatcttcatgaacggtttcttcgggattttg |
382 |
Q |
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|| ||||| ||||||||||||| || ||||||||||| ||||||||||| ||||| |
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| T |
20998400 |
gatgtgtttcggatcttgctcggcggttcttcatgaacagtttcttcgggtttttg |
20998345 |
T |
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