View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_7 (Length: 378)
Name: NF10240_7
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_7 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 14442312 - 14441942
Alignment:
| Q |
1 |
gtaaatgcatggagttgtagattttacatgcagatgagtaacatggggtttgtctatttggtgcccactacaatgtacttatccatgcatgctcaacctc |
100 |
Q |
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| T |
14442312 |
gtaaatgcatggagttgtagattttacatgcagatgagtaacatggggtttgtctatttggtgcccactacaatgtacttatccatgcatgctcaacctc |
14442213 |
T |
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| Q |
101 |
ataacaaatgtatttgtcaacnnnnnnnnnnnnnnntacaactcacaacattgtaatttagttatagtaaaaaattattttaattagttgtttgtatacg |
200 |
Q |
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| T |
14442212 |
ataacaaatgtatttgtcaacaaaaaaaataaaaaatacaactcacaacattgtaatttagttatagtaaaaaattattttaatgagttgtttgtatatg |
14442113 |
T |
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| Q |
201 |
ttaagagtgttaacatcacaatttttaacgtacacttttcaacataccgtttgattaattaaaatttatgtaggtcccatcaaaatatgtggattgtata |
300 |
Q |
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| T |
14442112 |
ttaagagtgttaacatcacaatttttaacgtacacttttcaacatactgtttgattaattaaaatttatgtgggtcccatcaaaatatgtggattgtata |
14442013 |
T |
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| Q |
301 |
aatttactacaatccatataaatttgaaacgaataaaatagagtttgttagcataattattatattcttgg |
371 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14442012 |
aatttactagaatccatataaatttgaaacgaataaaatagagtttgttagcataattattatattgttgg |
14441942 |
T |
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