View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10240_8 (Length: 344)

Name: NF10240_8
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10240_8
NF10240_8
[»] chr8 (5 HSPs)
chr8 (1-288)||(38341647-38341934)
chr8 (49-132)||(38333942-38334025)
chr8 (314-343)||(16515088-16515117)
chr8 (304-344)||(38341932-38341971)
chr8 (219-287)||(45000131-45000198)
[»] chr3 (3 HSPs)
chr3 (191-287)||(37549926-37550022)
chr3 (210-253)||(20642070-20642114)
chr3 (243-287)||(48507450-48507494)
[»] chr2 (5 HSPs)
chr2 (191-287)||(37422864-37422960)
chr2 (280-344)||(21449705-21449764)
chr2 (230-278)||(13728636-13728685)
chr2 (213-287)||(34957894-34957970)
chr2 (249-281)||(41873622-41873654)
[»] chr4 (7 HSPs)
chr4 (212-287)||(16502583-16502659)
chr4 (191-287)||(53504679-53504775)
chr4 (230-277)||(38870592-38870639)
chr4 (213-287)||(40020673-40020752)
chr4 (191-287)||(3479153-3479248)
chr4 (314-344)||(38870697-38870727)
chr4 (316-344)||(49445045-49445073)
[»] chr1 (3 HSPs)
chr1 (191-286)||(19607208-19607304)
chr1 (216-292)||(11046900-11046978)
chr1 (213-285)||(13818823-13818895)
[»] scaffold0493 (1 HSPs)
scaffold0493 (230-297)||(4167-4234)
[»] chr7 (2 HSPs)
chr7 (241-287)||(45249228-45249274)
chr7 (200-287)||(44208508-44208595)
[»] chr5 (5 HSPs)
chr5 (243-288)||(29075674-29075719)
chr5 (213-280)||(15047156-15047224)
chr5 (217-287)||(31673991-31674063)
chr5 (210-253)||(21524218-21524262)
chr5 (210-253)||(21534778-21534822)
[»] chr6 (1 HSPs)
chr6 (219-287)||(10525257-10525324)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38341647 - 38341934
Alignment:
Q  1 catcaacctcaacagccttgttaaatgggtttttagacagttcacgaactgcttgttttctcggctgccttgaggttttactacctttatcctccacacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341647 catcaacctcaacagccttgttaaatgggtttttagacagttcacgaactgcttgttttctcggctgccttgaggttttactacctttatcctccacacc 38341746  T
Q  101 aacaataggagatcttttatgcttctttagaggnnnnnnnctcccgttagcattctgagaaagattgcaaataaaatgatgtattgctaagaacccaaca 200  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38341747 aacaataggagatcttttatgcttctttagaggtttttttctcccgttagcattctgagaaagattgcaaataaaatgatgtattgttaagaacccaaca 38341846  T
Q  201 attgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaatat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341847 attgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaatat 38341934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 38333942 - 38334025
Alignment:
Q  49 ctgcttgttttctcggctgccttgaggttttactacctttatcctccacaccaacaataggagatcttttatgcttctttagag 132  Q
    ||||||||||||| || | |||||||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  38333942 ctgcttgttttcttggtttccttgaggatttaccacctttatcctccacaccagcaatagaagatattttatgcttctttagag 38334025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 343
Target Start/End: Complemental strand, 16515117 - 16515088
Alignment:
Q  314 tttgtgttctcttatttatacacatactct 343  Q
    ||||||||||||||||||||||||||||||    
T  16515117 tttgtgttctcttatttatacacatactct 16515088  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 38341932 - 38341971
Alignment:
Q  304 tatctaaccttttgtgttctcttatttatacacatactctc 344  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  38341932 tatctaaccttt-gtgttctcctatttatacacatactctc 38341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 45000131 - 45000198
Alignment:
Q  219 aacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||| ||||| |||||||||||| ||||  ||||| ||| |||||| ||||||||||||||| ||||||    
T  45000131 aacaattttattaagaaataggatagaacaggagagaatatctcct-caagggtttccccttcacaata 45000198  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 37550022 - 37549926
Alignment:
Q  191 gaacccaacaattgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||||||| ||| |||||||||||||||||||||||   ||||||||| || ||||| ||||||||||||||||||||| |||||||||| ||||||    
T  37550022 gaacccaagaatggaatggaatagaaagaacactttatttaagaaatatgatagaataggagataatctctcctccaagagtttccccttcacaata 37549926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 20642070 - 20642114
Alignment:
Q  210 aatagaaagaacacttttactaagaaa-taggaaagaatgggaga 253  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  20642070 aatagaaagaaaacttttattaagaaaataggaaagaatgggaga 20642114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 48507494 - 48507450
Alignment:
Q  243 agaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||    
T  48507494 agaataggagagaatctctcctccaagggtttccctttcacaata 48507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 37422864 - 37422960
Alignment:
Q  191 gaacccaacaattgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||||||| ||||||||   | ||||||||||||||||  ||||||||||| ||||| ||||| ||||||||||||||||||||| |||| ||||||    
T  37422864 gaacccaaaaattgaattccaaagaaagaacacttttatgaagaaataggatagaataggagagaatctctcctccaagggtttcaccttcacaata 37422960  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 21449705 - 21449764
Alignment:
Q  280 ttacaatattcaaaagatactctttatctaaccttttgtgttctcttatttatacacatactctc 344  Q
    ||||||||||||||||||||||||||    || |||| ||||||| |||||||||||||||||||    
T  21449705 ttacaatattcaaaagatactcttta----acatttt-tgttctcctatttatacacatactctc 21449764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 13728685 - 13728636
Alignment:
Q  230 taagaaataggaaagaatgggagataa-tctctcctccaagggtttcccc 278  Q
    |||||||||||||||||| ||||| || | ||||||||||||||||||||    
T  13728685 taagaaataggaaagaataggagagaaatatctcctccaagggtttcccc 13728636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 34957894 - 34957970
Alignment:
Q  213 agaaagaacacttttactaa-gaaataggaaagaatgggagataa-tctctcctccaagggtttcccctttacaata 287  Q
    |||| ||||||||||| ||| ||||||||||| ||| ||||| || ||||||||||||||||| | |||| ||||||    
T  34957894 agaacgaacacttttaataaagaaataggaaataataggagagaaatctctcctccaagggttacaccttcacaata 34957970  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 41873622 - 41873654
Alignment:
Q  249 ggagataatctctcctccaagggtttccccttt 281  Q
    ||||||||||||||||||||| |||||||||||    
T  41873622 ggagataatctctcctccaagagtttccccttt 41873654  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 16502659 - 16502583
Alignment:
Q  212 tagaaagaacacttttactaagaaataggaaagaatgggagataa-tctctcctccaagggtttcccctttacaata 287  Q
    |||||||||||||| || ||||||||| || ||||| ||||| || |||||||||||||||||||||||| ||||||    
T  16502659 tagaaagaacacttatattaagaaatatgatagaataggagagaaatctctcctccaagggtttccccttcacaata 16502583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 53504775 - 53504679
Alignment:
Q  191 gaacccaacaattgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    ||||| || |||||||||||||||||| |||||||    ||||||||| || ||||  || || |||| ||||||||||||||||||||| ||||||    
T  53504775 gaaccaaataattgaatggaatagaaaaaacacttaatttaagaaatatgatagaacaggggagaatcactcctccaagggtttccccttcacaata 53504679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 38870592 - 38870639
Alignment:
Q  230 taagaaataggaaagaatgggagataatctctcctccaagggtttccc 277  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  38870592 taagaaataggatagagtgggagataatctctcctgcaagggtttccc 38870639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 40020673 - 40020752
Alignment:
Q  213 agaaagaacacttttactaag---aaataggaaagaat-gggagat-aatctctcctccaagggtttcccctttacaata 287  Q
    |||||||||||||||| ||||   |||||||||||||| ||||||| |||||||||| |||||| |||||||| ||||||    
T  40020673 agaaagaacacttttattaagaaaaaataggaaagaatagggagataaatctctccttcaagggattccccttcacaata 40020752  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 3479153 - 3479248
Alignment:
Q  191 gaacccaacaattgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||||||| ||||||||  || ||||||||||||||   ||||||||| ||  ||||  |||| |||||||||| ||||||||||||||| ||||||    
T  3479153 gaacccaagaattgaattcaaaagaaagaacactttatttaagaaatatgatggaataagagagaatctctcct-caagggtttccccttgacaata 3479248  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 38870697 - 38870727
Alignment:
Q  314 tttgtgttctcttatttatacacatactctc 344  Q
    |||||||||||||||||||||||||||||||    
T  38870697 tttgtgttctcttatttatacacatactctc 38870727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 49445045 - 49445073
Alignment:
Q  316 tgtgttctcttatttatacacatactctc 344  Q
    |||||||||||||||||||||||||||||    
T  49445045 tgtgttctcttatttatacacatactctc 49445073  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 19607208 - 19607304
Alignment:
Q  191 gaacccaacaattgaatggaatagaaagaacacttttactaagaaa-taggaaagaatgggagataatctctcctccaagggtttcccctttacaat 286  Q
    |||||||  ||||| |||||||| |||||||| ||| | ||||||| || |||||| | ||||| |||||||||||||||||||||||||| |||||    
T  19607208 gaacccagtaattggatggaatataaagaacaatttaattaagaaaataagaaagagtaggagagaatctctcctccaagggtttccccttcacaat 19607304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 11046978 - 11046900
Alignment:
Q  216 aagaacacttttactaagaaa-taggaaagaatgggagataa-tctctcctccaagggtttcccctttacaatattcaa 292  Q
    |||||| |||||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| ||||| |||||    
T  11046978 aagaactcttttattaagaaaataggaaagaataggagataaatctctactccaagggtttccccttcacaatgttcaa 11046900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 13818823 - 13818895
Alignment:
Q  213 agaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaa 285  Q
    |||||||| ||||| |  |||||||| || | ||||||||| |||||||||| ||||||||||||||| ||||    
T  13818823 agaaagaaaactttcatgaagaaatatgataaaatgggagagaatctctccttcaagggtttccccttcacaa 13818895  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 4167 - 4234
Alignment:
Q  230 taagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaatattcaaaagat 297  Q
    ||||||||| || ||||| || || |||||||||| |||||||||||| || ||||||||||||||||    
T  4167 taagaaatatgatagaataggggagaatctctccttcaagggtttcccattcacaatattcaaaagat 4234  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 45249228 - 45249274
Alignment:
Q  241 aaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  45249228 aaagaatgggagaaaatctatcctccaagggtttccccttcacaata 45249274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 44208508 - 44208595
Alignment:
Q  200 aattgaatggaatagaaagaacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    ||||||||| ||||||||||| |||||   ||||||| | || |||||  |||| ||||| ||||||||| |||||||||| ||||||    
T  44208508 aattgaatgaaatagaaagaatactttatttaagaaacacgatagaataagagagaatctttcctccaagagtttccccttcacaata 44208595  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 29075719 - 29075674
Alignment:
Q  243 agaatgggagataatctctcctccaagggtttcccctttacaatat 288  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||    
T  29075719 agaattggagataatctctcctccaaggttttccccttcacaatat 29075674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 15047224 - 15047156
Alignment:
Q  213 agaaagaacacttttactaagaaataggaaagaatgggagataa-tctctcctccaagggtttcccctt 280  Q
    |||||||||||||||| | | || ||| ||||||| ||||| || ||||||||||||||||||||||||    
T  15047224 agaaagaacacttttattgataagtagaaaagaataggagagaaatctctcctccaagggtttcccctt 15047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 31674063 - 31673991
Alignment:
Q  217 agaacacttttactaagaaataggaaaga--atgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||||||||||| ||| |||||||| | |  || ||||| ||||||||||||||||| |||||||| ||||||    
T  31674063 agaacacttttattaaaaaataggatatataataggagagaatctctcctccaaggggttccccttcacaata 31673991  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 21524262 - 21524218
Alignment:
Q  210 aatagaaagaacacttttactaagaaa-taggaaagaatgggaga 253  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||    
T  21524262 aatagaaagaacacatttattaagaaaataggaaagaatgggaga 21524218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 21534822 - 21534778
Alignment:
Q  210 aatagaaagaacacttttactaagaaa-taggaaagaatgggaga 253  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||    
T  21534822 aatagaaagaacacatttattaagaaaataggaaagaatgggaga 21534778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 10525257 - 10525324
Alignment:
Q  219 aacacttttactaagaaataggaaagaatgggagataatctctcctccaagggtttcccctttacaata 287  Q
    |||| ||||| |||||||| ||| |||||  |||| |||||||||| ||||||||||||||| ||||||    
T  10525257 aacaattttattaagaaattggatagaatacgagaaaatctctcct-caagggtttccccttcacaata 10525324  T

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