View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10240_low_1 (Length: 424)
Name: NF10240_low_1
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_low_1 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0059 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 21037 - 21444
Alignment:
| Q |
13 |
ggacatcatatataaaaatgtgaacgcgtaagaaaacttatctcttgaacacatccttttaatgttgatttgatgctcttgaatg-------------at |
99 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
21037 |
ggacatcatatataaaaatgtgaaggtgtaaaaaaacttatctcttgaacacatccttttaatgttgatctgatgctcttgaatgtctctctttaatgat |
21136 |
T |
|
| Q |
100 |
tataggatataatcgtcatctccttctttctcaagtctcaatggataggcatacaatgacatcaaacctctcattacagatatgtcataaaagttactct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21137 |
tataggatataatcgtcatctccttctttctcaagtctcaatggataggcatacaatgacatcaaacctctcattacagatatgtcataaaagttattct |
21236 |
T |
|
| Q |
200 |
agtctacttattcaagtcattgcccttatgtccaaccaacatatagagaaagtggagagagaggacataccctttcttacagggttatagtggttctact |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
21237 |
agtctacttattcaagtcattgcccttatgt----ccaacatatagagaaagtg--gagagaggacataccctttcatatagggttatagtggttctact |
21330 |
T |
|
| Q |
300 |
aaatcttttaaaattataaggtaacaaaccatactctttcttgaagagttgaatggttctacaccatcatgggatacactattcaaacacactcacctgt |
399 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
21331 |
aaatcttttaaagttataaggtactaaaccatactctttcttgaagagttgaatggttctacaccatcatggaatacactattcaaacacactcaccagt |
21430 |
T |
|
| Q |
400 |
caccatgtgatgtc |
413 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21431 |
caccatgtgatgtc |
21444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 29026755 - 29026683
Alignment:
| Q |
125 |
ctttctcaagtctcaatggataggcatacaatgacatcaaacctctcattacagatatgtcataaaagttact |
197 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
29026755 |
ctttctcaagcctggatggataggcatacaatgacatcaaacctctcattaaagacattccataaaagttact |
29026683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 23952302 - 23952230
Alignment:
| Q |
89 |
tcttgaatgattataggatataatcgtcatctccttctttctcaagtctcaatggataggcatacaatgacat |
161 |
Q |
| |
|
|||||||| || |||||||| ||| || ||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23952302 |
tcttgaataataataggataagatcttcctctccttatttctcaagtctcaagggataggcatacaatgacat |
23952230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 31696079 - 31696125
Alignment:
| Q |
118 |
tctccttctttctcaagtctcaatggataggcatacaatgacatcaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
31696079 |
tctccttctttctcaagtctcaatggatagacatataatgacatcaa |
31696125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University