View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_low_5 (Length: 261)
Name: NF10240_low_5
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 14194465 - 14194241
Alignment:
| Q |
18 |
acatcacgtatatacaacacaggtcagcttttagaagtaagtcactctttatttttcaaaatatttgacatattatcatttgtgtaatataattaaatga |
117 |
Q |
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| T |
14194465 |
acatcacgtatatacaacacaggtcagcttttagaagtaagtcactctttatttttcaaaatatttgacatattatcatttgtgtaatataattaaatga |
14194366 |
T |
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| Q |
118 |
aataaaaagaaaaagcagcaaagcatgctaacataatggaggtggccataggaatgtgtgatgaacttgatgaaagtactgggtgtatttgttcacgaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
14194365 |
aataaaaagaaaaagcagcaaagcatgctaacataatggaggtggccataggaatgtgtgatgaacttgatgaaaatactgcatgtatttgttcaaaaca |
14194266 |
T |
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| Q |
218 |
accttgtcgtcaagattgtgattaa |
242 |
Q |
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|| |||||||||||||||||||||| |
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| T |
14194265 |
acgttgtcgtcaagattgtgattaa |
14194241 |
T |
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