View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10240_low_6 (Length: 248)
Name: NF10240_low_6
Description: NF10240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10240_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14380000 - 14379777
Alignment:
| Q |
1 |
ctaatgggttgggttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccc |
100 |
Q |
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| T |
14380000 |
ctaatgggttgagttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccc |
14379901 |
T |
|
| Q |
101 |
tggcaaagagcaagtaatgtcatgtttggttatgtaggttgattttatttctcgcatccgaagtttgttgagttgtaaatttaccaaaactctaattagt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14379900 |
tggcaaagagcaagtaatgtcatgtttggttatataggttgattttatttctcgcatccgaagtttgttgagttgtaaattgaccaaaactctaattagt |
14379801 |
T |
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| Q |
201 |
agaagttcgtcaaatagttgctgc |
224 |
Q |
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||||||| |||||||||||||||| |
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| T |
14379800 |
agaagttggtcaaatagttgctgc |
14379777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 14246243 - 14246463
Alignment:
| Q |
2 |
taatgggttgggttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccct |
101 |
Q |
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|||||||||| ||||||||||||||||||| ||| ||||||| || |||||| |||||||||||||||||| |||||||| ||||||||||||| | ||| |
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| T |
14246243 |
taatgggttgagttttcttactcaccttgaatacgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcct |
14246342 |
T |
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| Q |
102 |
ggcaaagagcaagtaatgtcatgtttggttatgtaggttgattttatttctcgcat-ccgaagtttgttgagttgtaaatttaccaaaactctaattagt |
200 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| ||||| ||| | || | || | |||| |||||||| ||||||||||||||| | |
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| T |
14246343 |
agcaaagagcacgtaatgtcatgtttggttatgtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaat |
14246442 |
T |
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| Q |
201 |
agaagttcgtcaaatagttgc |
221 |
Q |
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|||||| |||||||||||| |
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| T |
14246443 |
agaagtagatcaaatagttgc |
14246463 |
T |
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