View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10241_high_3 (Length: 243)
Name: NF10241_high_3
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10241_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 21706243 - 21706478
Alignment:
| Q |
1 |
ccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatat |
100 |
Q |
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| T |
21706243 |
ccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatat |
21706342 |
T |
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| Q |
101 |
catggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccat |
200 |
Q |
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| T |
21706343 |
catggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcatttacaagttttacgttgtgaaaatctgaaatctctattctccat |
21706442 |
T |
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| Q |
201 |
ggaggaatctagaagtctaccagagttgatgtccat |
236 |
Q |
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| T |
21706443 |
ggaggaatctagaagtctaccagagttgatgtccat |
21706478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 21713191 - 21712986
Alignment:
| Q |
31 |
tttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaaga |
130 |
Q |
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| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
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| Q |
131 |
ctcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgat |
230 |
Q |
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| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
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| Q |
231 |
gtccat |
236 |
Q |
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|||||| |
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| T |
21712991 |
gtccat |
21712986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 21709236 - 21709388
Alignment:
| Q |
82 |
cctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatc |
181 |
Q |
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||||| |||||| |||||||||||||||||| || |||||||||| | | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
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| Q |
182 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtcc |
234 |
Q |
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| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtcc |
21709388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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