View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10241_high_4 (Length: 226)

Name: NF10241_high_4
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10241_high_4
NF10241_high_4
[»] chr3 (12 HSPs)
chr3 (33-212)||(27157873-27158052)
chr3 (55-162)||(10514546-10514652)
chr3 (55-162)||(10661982-10662088)
chr3 (33-151)||(37278537-37278655)
chr3 (33-137)||(54923509-54923613)
chr3 (33-102)||(7131504-7131573)
chr3 (33-114)||(21129092-21129173)
chr3 (53-164)||(33095974-33096085)
chr3 (33-136)||(45475234-45475336)
chr3 (36-150)||(46008845-46008959)
chr3 (54-159)||(10511225-10511329)
chr3 (53-113)||(45178771-45178831)
[»] chr6 (6 HSPs)
chr6 (35-137)||(1266745-1266847)
chr6 (33-156)||(9297761-9297884)
chr6 (33-138)||(8977177-8977281)
chr6 (99-159)||(23259554-23259614)
chr6 (33-136)||(2314599-2314703)
chr6 (60-136)||(27866612-27866687)
[»] chr2 (14 HSPs)
chr2 (33-137)||(636987-637091)
chr2 (33-157)||(32517819-32517943)
chr2 (40-160)||(37103322-37103442)
chr2 (35-164)||(13491022-13491151)
chr2 (33-164)||(22999071-22999202)
chr2 (48-164)||(9993166-9993282)
chr2 (33-114)||(22382334-22382415)
chr2 (33-114)||(22914360-22914441)
chr2 (33-137)||(18741399-18741503)
chr2 (33-76)||(816430-816473)
chr2 (49-136)||(42200880-42200966)
chr2 (33-75)||(23840901-23840943)
chr2 (80-137)||(16178282-16178339)
chr2 (34-114)||(17052603-17052683)
[»] chr7 (10 HSPs)
chr7 (33-159)||(46021432-46021558)
chr7 (33-159)||(12645299-12645425)
chr7 (33-114)||(8037590-8037671)
chr7 (55-159)||(46910931-46911035)
chr7 (33-159)||(45957335-45957461)
chr7 (33-137)||(12961825-12961929)
chr7 (35-159)||(24333342-24333466)
chr7 (36-159)||(27998900-27999024)
chr7 (33-81)||(33395152-33395201)
chr7 (48-113)||(37938080-37938147)
[»] chr4 (11 HSPs)
chr4 (33-164)||(46343325-46343456)
chr4 (33-159)||(37759429-37759556)
chr4 (33-151)||(28758386-28758504)
chr4 (55-137)||(33530242-33530324)
chr4 (33-164)||(37340109-37340239)
chr4 (41-159)||(24870598-24870716)
chr4 (53-164)||(9696313-9696424)
chr4 (33-165)||(46107388-46107520)
chr4 (55-127)||(48391722-48391794)
chr4 (47-164)||(13849352-13849469)
chr4 (33-85)||(32057725-32057777)
[»] chr8 (12 HSPs)
chr8 (33-165)||(39709625-39709757)
chr8 (33-144)||(31291235-31291346)
chr8 (33-163)||(33128166-33128296)
chr8 (61-159)||(1522694-1522792)
chr8 (54-159)||(40418129-40418234)
chr8 (33-135)||(5700649-5700752)
chr8 (47-136)||(7772066-7772154)
chr8 (54-159)||(12320988-12321093)
chr8 (33-138)||(31941036-31941140)
chr8 (33-86)||(37820895-37820948)
chr8 (78-146)||(25899228-25899296)
chr8 (33-136)||(41562466-41562570)
[»] scaffold0160 (1 HSPs)
scaffold0160 (33-114)||(22128-22209)
[»] chr1 (15 HSPs)
chr1 (57-166)||(7204533-7204642)
chr1 (57-164)||(8312553-8312660)
chr1 (54-151)||(27868287-27868384)
chr1 (33-76)||(27266875-27266918)
chr1 (34-165)||(37315056-37315187)
chr1 (120-163)||(45611549-45611592)
chr1 (49-160)||(49632555-49632665)
chr1 (33-114)||(11080962-11081043)
chr1 (33-127)||(35068907-35069001)
chr1 (54-159)||(17540099-17540203)
chr1 (33-138)||(45751028-45751133)
chr1 (33-133)||(12502727-12502827)
chr1 (59-151)||(13979745-13979837)
chr1 (48-136)||(41651097-41651185)
chr1 (48-136)||(42631002-42631089)
[»] chr5 (8 HSPs)
chr5 (48-108)||(6525891-6525951)
chr5 (47-163)||(22792125-22792241)
chr5 (35-163)||(35362832-35362960)
chr5 (33-136)||(10165556-10165658)
chr5 (33-164)||(11408369-11408500)
chr5 (47-151)||(9599321-9599425)
chr5 (48-156)||(972611-972718)
chr5 (34-78)||(14569690-14569734)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-159)||(19332-19440)
[»] scaffold0045 (1 HSPs)
scaffold0045 (41-76)||(42987-43022)
[»] scaffold0633 (1 HSPs)
scaffold0633 (48-136)||(3811-3899)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 27158052 - 27157873
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27158052 agatagatgagatggcaaaaccatcataaactcatacacataaaatagaggtattgaggttcgaaccccgatcataacgtcctgccaaacaatttcggca 27157953  T
Q  133 tttttgtaagttgaactagaacttatgggacatgataacgttattctaatgagatgagattgaacaccgttatacaaaat 212  Q
    |||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27157952 tttttgtcggttgaattagaacttatggaacatgataacgttattctaatgagatgagattgaacaccgttatacaaaat 27157873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 10514652 - 10514546
Alignment:
Q  55 atcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaac 154  Q
    ||||||||||||||||| |||| |  |||||| | | |||||||||||| ||| || ||| | | ||||||||||||||||||||  |||||||||| ||    
T  10514652 atcataaactcacacacgcaaagtgtaggtatcg-gatttgaaccccgaccatgacatccggcctaacaatttcggcatttttgtctgttgaactaggac 10514554  T
Q  155 ttatggga 162  Q
    ||||||||    
T  10514553 ttatggga 10514546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 10662088 - 10661982
Alignment:
Q  55 atcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaac 154  Q
    |||||||||||||||||  ||| | ||||||| | |||| ||||||||| ||| ||||||   | |||||||||||||||||||| ||||||||||  ||    
T  10662088 atcataaactcacacacgtaaagtggaggtatcg-ggttcgaaccccgaccatgacgtccaacctaacaatttcggcatttttgtcagttgaactatgac 10661990  T
Q  155 ttatggga 162  Q
    ||||||||    
T  10661989 ttatggga 10661982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 37278537 - 37278655
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  |||| |||||||||||||||||| ||||| | |||||| |  | ||||||||||||||||||  | |  || |||||||||| ||    
T  37278537 agatagacgagatgacaaagtcatcataaactcacacatacaaagtggaggtactaggatttgaaccccgatcataatattcaatctaacaatttcgaca 37278636  T
Q  133 tttttgtaagttgaactag 151  Q
    ||||||| |||||| ||||    
T  37278637 tttttgtcagttgagctag 37278655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 54923613 - 54923509
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  ||||||||||||||| ||||||||||||||| || |||| |  ||| |||||||| |||| ||||||   | |||||||||| ||    
T  54923613 agatagacgagatgacaaaatcatcataaattcacacacacaaaatggaagtatcggagttcgaaccccggtcatgacgtccgacctaacaatttcgaca 54923514  T
Q  133 ttttt 137  Q
    |||||    
T  54923513 ttttt 54923509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 7131504 - 7131573
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccg 102  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||| | ||||||| || ||| ||||||||    
T  7131504 agatagaagagatggcaaagccatcataaactcacacacacaaagtggaggtatcgaagttcgaaccccg 7131573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 21129173 - 21129092
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    |||||||  |||| |||||  ||||||||||||||| ||||||| ||||||||  | |||| ||||||||||||| ||||||    
T  21129173 agatagacaagatggcaaagccatcataaactcacaaacacaaagtagaggtaccggggttcgaaccccgatcatgacgtcc 21129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 33096085 - 33095974
Alignment:
Q  53 tcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactaga 152  Q
    ||||| |||||||||||||||||| | ||||| | |  ||||||||||| ||||| |||| | | | |||||||||| ||||||||  ||||||  |||     
T  33096085 tcatcgtaaactcacacacacaaagtggaggtgtcggagtttgaaccccaatcatgacgttcggcctaacaatttcgtcatttttgccagttgagttagg 33095986  T
Q  153 acttatgggaca 164  Q
    ||||||| ||||    
T  33095985 acttatgtgaca 33095974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 45475234 - 45475336
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| || || |||||| ||| |||||||||||||||| || | ||||||| | |||| ||||||| |||||||| ||| | | ||||||||||| |    
T  45475234 agatagacgaaatggcaaaaccattataaactcacacacac-aagtggaggtatcggggttcgaaccccaatcataacatccggcctaacaatttcggta 45475332  T
Q  133 tttt 136  Q
    ||||    
T  45475333 tttt 45475336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 46008959 - 46008845
Alignment:
Q  36 tagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtat-tgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    |||| ||||| |||||| |||| |||||||| ||||||||| | ||||||| |||| || |||| |||||||| |||||| | | |||||||| ||||||    
T  46008959 tagaagagatcgcaaaaccatcgtaaactcatacacacaaagtggaggtatctgag-ttcgaactccgatcatgacgtccggcctaacaatttaggcatt 46008861  T
Q  135 tttgtaagttgaacta 150  Q
    |  | |||||||||||    
T  46008860 tacgcaagttgaacta 46008845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 10511329 - 10511225
Alignment:
Q  54 catcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaa 153  Q
    ||||||||| |||||||| |||| | ||||||| | |||| |||||| || || ||||| |   | ||| |||||||||||||||| ||||||||||| |    
T  10511329 catcataaattcacacacgcaaagtggaggtatcg-ggttcgaaccctgaccacaacgtacaacctaacgatttcggcatttttgtcagttgaactagga 10511231  T
Q  154 cttatg 159  Q
    ||||||    
T  10511230 cttatg 10511225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 45178771 - 45178831
Alignment:
Q  53 tcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtc 113  Q
    |||||||||||||||||| ||||||| ||  ||||| |||| ||| |||||| ||||||||    
T  45178771 tcatcataaactcacacatacaaaatggaaatattgcggttcgaatcccgattataacgtc 45178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 1266745 - 1266847
Alignment:
Q  35 atagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    ||||||||||| ||||||  |||||||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||| | | |||||||||||||||    
T  1266745 atagatgagatggcaaaactatcataaactcacacacacaaaatggaggtactgaggtccgaaccccgatcatgacgtccggcctaacaatttcggcatt 1266844  T
Q  135 ttt 137  Q
    |||    
T  1266845 ttt 1266847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 9297884 - 9297761
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttg-aaccccgatcataacgtcctgtcaaacaatttcggc 131  Q
    ||||||| | ||| |||||| ||||||||||||||||||||||| | ||||||  | |||| | |||||| ||||| |||||  | | |||||||||| |    
T  9297884 agatagacgggatggcaaaaccatcataaactcacacacacaaagtggaggtaccg-ggttcgaaaccccaatcatgacgtctggcctaacaatttcgac 9297786  T
Q  132 atttttgtaagttgaactagaactt 156  Q
    |||||||| ||||||||||| ||||    
T  9297785 atttttgtcagttgaactaggactt 9297761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 8977281 - 8977177
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| || || |||||| ||| |||||||||||||||| |||| ||||||  | |||| ||||||||||||| || ||| | | |||||||| ||||    
T  8977281 agatagacgaaatggcaaaaccattataaactcacacacac-aaatggaggtaccggggttcgaaccccgatcatgacatccggcctaacaatttgggca 8977183  T
Q  133 tttttg 138  Q
    ||||||    
T  8977182 tttttg 8977177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 23259554 - 23259614
Alignment:
Q  99 cccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaacttatg 159  Q
    |||||||||||||||| |   || ||||||||||||||||| |||||| ||||||||||||    
T  23259554 cccgatcataacgtccggcataataatttcggcatttttgtcagttgagctagaacttatg 23259614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 2314599 - 2314703
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacaca-aaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggc 131  Q
    ||||||| || || ||||| |||| ||||||||||||||||| || | ||||||  | |||| |||||||| |||| || ||| | | ||||||||||||    
T  2314599 agatagacgaaatggcaaagtcattataaactcacacacacacaagtggaggtaccggggttcgaaccccggtcatgacatccggcctaacaatttcggc 2314698  T
Q  132 atttt 136  Q
    |||||    
T  2314699 atttt 2314703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 27866687 - 27866612
Alignment:
Q  60 aaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||||||  | ||| | | |||||||| ||||||||    
T  27866687 aaactcacacacacaag-tagaggtattggggttcgaaccccgatcatggcatccggcctaacaattttggcatttt 27866612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 637091 - 636987
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| | |||| |  || ||||||||||| |||||||||||| ||| |||||||||| ||    
T  637091 agatagacgagatggcaaaatcatcataaactcacacacacaaagtggaggaacagatgtttgaaccccaatcataacgtccggtctaacaatttcgaca 636992  T
Q  133 ttttt 137  Q
    |||||    
T  636991 ttttt 636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 32517819 - 32517943
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    |||||||| |||| ||||| |||||||||||||||||||||||| | ||||||  | |||| ||||| || |||| |||||| | | |||||||||| ||    
T  32517819 agatagataagatggcaaagtcatcataaactcacacacacaaagtggaggtaccggggttcgaacctcggtcatgacgtccagcctaacaatttcgaca 32517918  T
Q  133 tttttgtaagttgaactagaactta 157  Q
    ||||| | ||||||||||| |||||    
T  32517919 tttttatcagttgaactaggactta 32517943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 37103442 - 37103322
Alignment:
Q  40 tgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgt 139  Q
    |||||| ||||| |||||||||| ||||||||||||||  ||||||| | ||||  ||||||| |||| | |||| ||| |||||||||| |||||||||    
T  37103442 tgagatggcaaagtcatcataaattcacacacacaaaacggaggtatcggggttcaaaccccggtcatgatgtccggtctaacaatttcgacatttttgt 37103343  T
Q  140 aagttgaactagaacttatgg 160  Q
     |||||| |||| ||||||||    
T  37103342 cagttgagctaggacttatgg 37103322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 13491151 - 13491022
Alignment:
Q  35 atagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    ||||| ||||| |||||  || |||||||||||||||||||| | |||||||||||||| |||||||| |||| |||||| |   ||||||||||| |||    
T  13491151 atagaagagatggcaaagccaccataaactcacacacacaaagtggaggtattgaggttcgaaccccggtcatgacgtccggcataacaatttcggtatt 13491052  T
Q  135 tttgtaagttgaactagaacttatgggaca 164  Q
    ||||  |||||| |||  ||||||| ||||    
T  13491051 tttgccagttgagctatgacttatgagaca 13491022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 22999202 - 22999071
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| | ||||| | | |||| |||||||| |||| |||||| | | |||||||| ||||    
T  22999202 agatagacgagatgacaaaaccatcataaactcacacacacaaagtggaggtgtcggggttcgaaccccggtcatgacgtccggactaacaattttggca 22999103  T
Q  133 tttttgtaagttgaactagaacttatgggaca 164  Q
    |||||    ||||| |||| ||||||||||||    
T  22999102 tttttacccgttgagctaggacttatgggaca 22999071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 9993282 - 9993166
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaa 147  Q
    |||| ||||| ||||||||||  |||||| | |||||| || |||| |||||||||| || |||||| |   |||||||||| ||||||||| ||||||     
T  9993282 caaagtcatcgtaaactcacatgcacaaagttgaggtactggggttcgaaccccgattatgacgtccggcttaacaatttcgacatttttgtcagttgag 9993183  T
Q  148 ctagaacttatgggaca 164  Q
    ||| |||||||||||||    
T  9993182 ctataacttatgggaca 9993166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 22382334 - 22382415
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    ||||||| |||||  ||||| ||||||||||||||| ||||||| | ||||| | | |||| ||||||||||||| ||||||    
T  22382334 agatagacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggttcgaaccccgatcatgacgtcc 22382415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 22914360 - 22914441
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    ||||||| |||||  ||||| ||||||||||||||| ||||||| | ||||| | | |||| ||||||||||||| ||||||    
T  22914360 agatagacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggttcgaaccccgatcatgacgtcc 22914441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 18741399 - 18741503
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  |||| |||||||||||||||||||||||| | ||||||  |  ||||||||| ||||||| | || |   | |||||||||||||    
T  18741399 agatagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtaccggagtttgaacctcgatcatgatgttcgacctaacaatttcggca 18741498  T
Q  133 ttttt 137  Q
    |||||    
T  18741499 ttttt 18741503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 816473 - 816430
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaa 76  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||    
T  816473 agatagacgagatggcaaaaccatcataaactcacacacacaaa 816430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 42200880 - 42200966
Alignment:
Q  49 aaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    |||||||| |||||||||||||||| || | ||||||  |||||| ||||||||||||| || ||| | | |||||||| ||||||||    
T  42200880 aaaatcattataaactcacacacac-aagtggaggtaccgaggttcgaaccccgatcatgacatccggcctaacaattttggcatttt 42200966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 23840943 - 23840901
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaa 75  Q
    |||||||||| |||||||| |||| ||||||||||||||||||    
T  23840943 agatagatgaaatagcaaagtcattataaactcacacacacaa 23840901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 16178339 - 16178282
Alignment:
Q  80 gaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcattttt 137  Q
    ||||||||| |||| |||||||||||||  ||||||  | ||||||||||||||||||    
T  16178339 gaggtattggggttcgaaccccgatcatggcgtcctacctaacaatttcggcattttt 16178282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 17052683 - 17052603
Alignment:
Q  34 gatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    |||||| ||||| |||||  ||||||||| ||||||||||||| | ||||||  |  |||||||||||| |||| ||||||    
T  17052683 gatagaagagatggcaaagccatcataaattcacacacacaaagtggaggtaccggagtttgaaccccggtcatgacgtcc 17052603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 46021432 - 46021558
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||||| ||||||  | |||| |||||||| |||| || ||| | | |||||||||||||    
T  46021432 agatagaagagatggcaaagccatcataaactcacacacacaaaatggaggtaccggggttcgaaccccggtcatgacatccggcctaacaatttcggca 46021531  T
Q  133 tttttgtaagttgaactagaacttatg 159  Q
    ||||| | |||||| |||| |||||||    
T  46021532 tttttatcagttgagctaggacttatg 46021558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 12645299 - 12645425
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  ||||| |||||||||| |||||||| ||| | ||||||  | |||| ||||| || |||| |||||| | | |||||||||| ||    
T  12645299 agatagacgagatgacaaaaccatcataaacccacacacataaagtggaggtacaggggttcgaacctcggtcattacgtccggcctaacaatttcgaca 12645398  T
Q  133 tttttgtaagttgaactagaacttatg 159  Q
    ||||||  |||||||||||||||||||    
T  12645399 tttttggcagttgaactagaacttatg 12645425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 8037671 - 8037590
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    ||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||| ||  ||| |||| |||||||| ||||||    
T  8037671 agatagacgagatggcaaaatcatcataaactcatacacataaaatggaggtactggagttcgaactccgatcatgacgtcc 8037590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 46910931 - 46911035
Alignment:
Q  55 atcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaac 154  Q
    |||||||||||| ||||||||| | ||||||  |||||| ||||||||||||| |||| | | | |||| |||||  |||||||  |||||||||| |||    
T  46910931 atcataaactcagacacacaaagttgaggtaccgaggttcgaaccccgatcatgacgttcggcctaacagtttcgatatttttgccagttgaactataac 46911030  T
Q  155 ttatg 159  Q
    |||||    
T  46911031 ttatg 46911035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 45957335 - 45957461
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  |||| || ||||||||| ||||||||||| | ||||||  | |||| |||||| |||||| |||||| ||  |||||||| ||||    
T  45957335 agatagaagagatgacaaagtcttcataaactaacacacacaaagtggaggtaccggggttcgaaccctgatcatgacgtccggtttaacaattttggca 45957434  T
Q  133 tttttgtaagttgaactagaacttatg 159  Q
    ||||||  | |||| |||| |||||||    
T  45957435 tttttgccaattgagctaggacttatg 45957461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 12961825 - 12961929
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  |||| |||||||||||||||||||||||| |  |||||  |||||| |||| |||||||| | |||| | | |||||||||  ||    
T  12961825 agatagaagagatgacaaagtcatcataaactcacacacacaaattgaaggtaccgaggttcgaactccgatcatgatgtccggcctaacaatttctaca 12961924  T
Q  133 ttttt 137  Q
    |||||    
T  12961925 ttttt 12961929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 24333466 - 24333342
Alignment:
Q  35 atagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    ||||| |||||  ||||| ||||||||  || |||||| ||| | |||||| ||  ||| ||||||||||||| |||  | | | |||||||||| ||||    
T  24333466 atagaagagatgacaaaaccatcataagttcgcacacataaagtggaggtactggagttcgaaccccgatcatgacgctcggcctaacaatttcgacatt 24333367  T
Q  135 tttgtaagttgaactagaacttatg 159  Q
    |||||||||||| |||| |||||||    
T  24333366 tttgtaagttgagctaggacttatg 24333342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 27998900 - 27999024
Alignment:
Q  36 tagatgagatagcaaaatcatcataaactcacacacacaaaa-tagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    |||| ||||| ||||| |||||||||||||| |||||||||| | ||||||     ||| ||| ||||||||| |||||| ||| |||||||||||| |     
T  27998900 tagaagagatggcaaagtcatcataaactcaaacacacaaaaatggaggtaccagagttcgaatcccgatcatgacgtccagtctaacaatttcggcgta 27998999  T
Q  135 tttgtaagttgaactagaacttatg 159  Q
    ||||  |||||| ||| ||||||||    
T  27999000 tttgcgagttgagctaaaacttatg 27999024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 33395201 - 33395152
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaa-ctcacacacacaaaataga 81  Q
    ||||| |||||||  ||||||||||||||| |||||||||||||||||||    
T  33395201 agataaatgagatgacaaaatcatcataaaactcacacacacaaaataga 33395152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 37938080 - 37938147
Alignment:
Q  48 caaaatcatcataaa--ctcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtc 113  Q
    |||| ||||||||||  |||||||||| ||| | |||||||||| |||||||| |||||||| |||||    
T  37938080 caaagtcatcataaactctcacacacataaagtggaggtattgatgtttgaacaccgatcatgacgtc 37938147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 46343456 - 46343325
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  |||| |||||||||||||||||||  ||||| |||||| |  |||| |||||||| |||| |||||| | | |||||||||||||    
T  46343456 agatagaagagatgacaaagtcatcataaactcacacacgtaaaatggaggtactagggttcgaaccccggtcatgacgtccggcctaacaatttcggca 46343357  T
Q  133 tttttgtaagttgaactagaacttatgggaca 164  Q
     |||||| |||||| |||| ||||||| ||||    
T  46343356 cttttgtcagttgagctaggacttatgagaca 46343325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 37759556 - 37759429
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaa-ccccgatcataacgtcctgtcaaacaatttcggc 131  Q
    ||||||| |||||  ||||  ||||||||||||||||||||||| | |||| || |||||| ||| |||||||||| |||||| ||| ||||||||| ||    
T  37759556 agatagaagagatgacaaagccatcataaactcacacacacaaagtggaggaatcgaggttcgaacccccgatcatgacgtccggtctaacaatttcagc 37759457  T
Q  132 atttttgtaagttgaactagaacttatg 159  Q
    |||||||  |||||| |||  |||||||    
T  37759456 atttttgccagttgagctatgacttatg 37759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 28758504 - 28758386
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||||| ||||| |||| ||||||||||||||||||| | |||||| || |||| |||| ||| |||| ||||||   | || ||||||||||    
T  28758504 agatagaagagattgcaaagtcattataaactcacacacacaaagtggaggtactggggttcgaactccggtcatgacgtccgacctaataatttcggca 28758405  T
Q  133 tttttgtaagttgaactag 151  Q
    ||||||  |||||||||||    
T  28758404 tttttgccagttgaactag 28758386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 33530324 - 33530242
Alignment:
Q  55 atcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcattttt 137  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| || |||| |||||| | | |||||||||  |||||||    
T  33530324 atcataaactcacacacacaaagtagaggtactgaggtttgaacctcggtcatgacgtccggcctaacaatttcaacattttt 33530242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 37340109 - 37340239
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  ||||||||||||||||||||||||||||| | ||| ||  | |||| ||| || |||||| |||| | | | |||||||||| ||    
T  37340109 agatagacgagatgacaaaatcatcataaactcacacacacaaagtggagataccgtggttcgaa-cctgatcatgacgttcggcctaacaatttcgaca 37340207  T
Q  133 tttttgtaagttgaactagaacttatgggaca 164  Q
    ||||| | ||||||||||| ||||||| ||||    
T  37340208 tttttatcagttgaactaggacttatgagaca 37340239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 24870716 - 24870598
Alignment:
Q  41 gagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgta 140  Q
    ||||| |||||  ||||||||||||||||||  ||| | ||||||  |||||| ||||| || |||| |||||| | | |||||||||||||||||||      
T  24870716 gagatggcaaagccatcataaactcacacacgtaaagtggaggtaccgaggttcgaacctcggtcattacgtccggcctaacaatttcggcatttttgcc 24870617  T
Q  141 agttgaactagaacttatg 159  Q
    |||||| |||| |||||||    
T  24870616 agttgagctaggacttatg 24870598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 9696313 - 9696424
Alignment:
Q  53 tcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactaga 152  Q
    |||||||||||| ||||||| ||| | ||||||  |||||| |||||||||||||||||| |   | |||||||||| ||||||||  | |||| ||| |    
T  9696313 tcatcataaacttacacacataaagtggaggtaccgaggttcgaaccccgatcataacgttcgacctaacaatttcgacatttttgccaattgagctata 9696412  T
Q  153 acttatgggaca 164  Q
     |||||||||||    
T  9696413 ccttatgggaca 9696424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 46107520 - 46107388
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||| | ||||| |||||||||| ||||||||| ||| | ||||||| | |||| ||| | ||||||| |||||   || || ||||| | ||    
T  46107520 agatagaagagttggcaaattcatcataaattcacacacataaagtggaggtatcggggttcgaatctcgatcatgacgtctgatctaataattttgaca 46107421  T
Q  133 tttttgtaagttgaactagaacttatgggacat 165  Q
    ||||| | ||||||||||| ||| |||||||||    
T  46107420 tttttatcagttgaactaggactgatgggacat 46107388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 48391794 - 48391722
Alignment:
Q  55 atcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaattt 127  Q
    |||||||||||||||| |||||||||||||| || |||| |||||||  |||| |||||| | | ||||||||    
T  48391794 atcataaactcacacatacaaaatagaggtactggggttcgaaccccagtcatgacgtccagcctaacaattt 48391722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 13849469 - 13849352
Alignment:
Q  47 gcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttga 146  Q
    ||||| |||| | |||||| |||||||||| | ||||| | | |||| ||||||||||||  |||||    | |||||||||| ||||||||| ||||||    
T  13849469 gcaaagtcataacaaactcccacacacaaagtggaggtgtcggggttcgaaccccgatcaagacgtctgacctaacaatttcgacatttttgtcagttga 13849370  T
Q  147 actagaacttatgggaca 164  Q
     |||| ||||||| ||||    
T  13849369 gctaggacttatgagaca 13849352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 32057725 - 32057777
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggta 85  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| | ||||||    
T  32057725 agatagacgagatgacaaaaccatcataaactcacacacacaaagtggaggta 32057777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 39709625 - 39709757
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    |||||||| |||| |||||| ||||||||||||||||| | ||| | |||||||    |||||||||||  |||  |||||| ||| |||||||||| ||    
T  39709625 agatagataagatggcaaaaccatcataaactcacacatataaagtggaggtatcagagtttgaaccccagtcacgacgtccggtctaacaatttcgaca 39709724  T
Q  133 tttttgtaagttgaactagaacttatgggacat 165  Q
    |||||   |||||| ||||||||||||||||||    
T  39709725 tttttagcagttgagctagaacttatgggacat 39709757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 31291346 - 31291235
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| |||||  ||||| ||||||||||||||| |||||||||  |||||   | ||| ||||||||||||| |||| | | | |||||||||||||    
T  31291346 agatagacgagatgacaaaaccatcataaactcacaaacacaaaatgaaggtaccaaagttcgaaccccgatcatgacgttcggcctaacaatttcggca 31291247  T
Q  133 tttttgtaagtt 144  Q
    ||||||| ||||    
T  31291246 tttttgtcagtt 31291235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 33128166 - 33128296
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    |||||||||||||  ||||  ||| ||||||||||| ||||||| | ||||||  | |||| ||||||||||||| |||| | | | ||||||||| |||    
T  33128166 agatagatgagatgacaaatgcataataaactcacatacacaaagtggaggtaccggggttcgaaccccgatcatgacgttcggcctaacaatttcagca 33128265  T
Q  133 tttttgtaagttgaactagaacttatgggac 163  Q
    ||||||  |||||| |||  |||||||||||    
T  33128266 tttttgctagttgagctatgacttatgggac 33128296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 1522792 - 1522694
Alignment:
Q  61 aactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaacttatg 159  Q
    |||||||||||  ||| | ||||||| |||||| ||||||||||||| | |||| | | ||||||||||| |||||||  |||||| |||| |||||||    
T  1522792 aactcacacacgtaaagtggaggtatggaggttcgaaccccgatcatgaagtccggcctaacaatttcggtatttttgccagttgagctaggacttatg 1522694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 40418234 - 40418129
Alignment:
Q  54 catcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaa 153  Q
    ||||||||||||||||||| ||| | ||||||| | |||| |||| ||| |||| |||||  | | ||||||||| ||||||||   |||||| ||||||    
T  40418234 catcataaactcacacacataaagtggaggtatcggggttcgaactccggtcatgacgtctggcctaacaatttcagcatttttaccagttgagctagaa 40418135  T
Q  154 cttatg 159  Q
    ||||||    
T  40418134 cttatg 40418129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 5700649 - 5700752
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacaca-aaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggc 131  Q
    ||||||| || || ||||| |||| ||||||||||||||||| || | |||||| || |||| |||||||| ||||| | ||| | | ||||||||||||    
T  5700649 agatagacgaaatggcaaagtcattataaactcacacacacataagtggaggtactggggttcgaaccccggtcatagcatccggcctaacaatttcggc 5700748  T
Q  132 attt 135  Q
    ||||    
T  5700749 attt 5700752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 7772066 - 7772154
Alignment:
Q  47 gcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    ||||| |||| ||||||||||||||||||  | ||||||  | |||| ||||||||||||| || ||| | | |||||||||||||||||    
T  7772066 gcaaagtcattataaactcacacacacaag-tggaggtaccggggttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 7772154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 12321093 - 12320988
Alignment:
Q  54 catcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaa 153  Q
    |||||||||||||||| |||||| ||||||||| | |||| |||| | | || | |||| | | | |||||||| | ||||||||| |||||| |||| |    
T  12321093 catcataaactcacacgcacaaagtagaggtatcggggttcgaactctggtcgtgacgttcggcctaacaattttgacatttttgtcagttgagctagga 12320994  T
Q  154 cttatg 159  Q
    ||||||    
T  12320993 cttatg 12320988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 31941036 - 31941140
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    |||||||||  || |||||  ||| ||||||||||||||| ||  | ||||||| | |||| ||||||||||||| || ||| | | |||||||||||||    
T  31941036 agatagatggaatggcaaagccattataaactcacacacataag-tggaggtatcggggttcgaaccccgatcatgacatccagcctaacaatttcggca 31941134  T
Q  133 tttttg 138  Q
    ||||||    
T  31941135 tttttg 31941140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 37820895 - 37820948
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtat 86  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| | |||||||    
T  37820895 agatagaagagatgacaaaaccatcataaactcacacacacaaagtggaggtat 37820948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 25899228 - 25899296
Alignment:
Q  78 tagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttga 146  Q
    ||||||||  ||||||  ||||||| |||| |||||| | | |||||||||||||||||||| ||||||    
T  25899228 tagaggtaccgaggttcaaaccccggtcatgacgtccggcctaacaatttcggcatttttgtcagttga 25899296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 41562570 - 41562466
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacaca-aaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggc 131  Q
    ||||||| || || |||||| ||| ||||||||||||||||| || | ||||||  | |||| |||||||||||||| | ||| | | |||||||||| |    
T  41562570 agatagacgaaatggcaaaaccattataaactcacacacacacaagtggaggtaccggggttcgaaccccgatcatagcatccggcctaacaatttcgac 41562471  T
Q  132 atttt 136  Q
    |||||    
T  41562470 atttt 41562466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 22209 - 22128
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    ||||||| |||||  |||| |||||||||||||||||||||||| | ||||||| | |||| ||||||||||||| ||||||    
T  22209 agatagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtatcggggttcgaaccccgatcatgacgtcc 22128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 7204533 - 7204642
Alignment:
Q  57 cataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaactt 156  Q
    |||||||||||| ||||||| | ||||||| | |||| |||||||| |||| | || | | | |||||||||||||||||||  |||||| |||| ||||    
T  7204533 cataaactcacatacacaaagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggactt 7204632  T
Q  157 atgggacatg 166  Q
    ||||||||||    
T  7204633 atgggacatg 7204642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 8312553 - 8312660
Alignment:
Q  57 cataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaactt 156  Q
    ||||||||||| |||||||| | ||||||  | |||| ||||| |||||||||||| | | | |||||||||| |||||||||  |||||||||| ||||    
T  8312553 cataaactcactcacacaaagtggaggtaccggggttcgaacctcgatcataacgttcggcctaacaatttcgacatttttgtccgttgaactaggactt 8312652  T
Q  157 atgggaca 164  Q
    ||| ||||    
T  8312653 atgagaca 8312660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 27868384 - 27868287
Alignment:
Q  54 catcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactag 151  Q
    ||||||||||||||||||||||| | || |||  |||||||||||||||  ||  |||||| | | ||||||||||| |||||||| |||||| ||||    
T  27868384 catcataaactcacacacacaaagtggaagtaccgaggtttgaaccccggccaagacgtccggcctaacaatttcggtatttttgtcagttgagctag 27868287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 27266918 - 27266875
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaa 76  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  27266918 agatagatgagattgcaaaatcatcattaactcacacacacaaa 27266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 37315056 - 37315187
Alignment:
Q  34 gatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcat 133  Q
    |||||| |||||  |||| ||| || ||||||||||||||||| | |||||   |||||| |||| | |||||| |||||| | | ||||||||||||||    
T  37315056 gatagacgagatgacaaagtcaacacaaactcacacacacaaagtggaggttccgaggttcgaactcggatcatgacgtccagcctaacaatttcggcat 37315155  T
Q  134 ttttgtaagttgaactagaacttatgggacat 165  Q
    |||||| | | || |||| ||| |||||||||    
T  37315156 ttttgtcattcgagctaggactcatgggacat 37315187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 45611549 - 45611592
Alignment:
Q  120 aacaatttcggcatttttgtaagttgaactagaacttatgggac 163  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  45611549 aacaatttcggcatttttgtcagttgagctagaacttatgggac 45611592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 49632665 - 49632555
Alignment:
Q  49 aaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaac 148  Q
    |||||||| ||||||||||||||||||  | ||||||| | |||| ||||| || |||| || ||| | | ||||||||||||||||||   ||||||||    
T  49632665 aaaatcattataaactcacacacacaag-tggaggtatcggggttcgaacctcggtcatgacatccagcctaacaatttcggcatttttaccagttgaac 49632567  T
Q  149 tagaacttatgg 160  Q
    ||| ||||||||    
T  49632566 taggacttatgg 49632555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 11080962 - 11081043
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcc 114  Q
    ||||||| |||||  ||||| ||||||| ||||| ||||| ||| | ||||||| | ||||||||||||| |||||||||||    
T  11080962 agatagacgagatgacaaaaccatcatatactcatacacataaagtggaggtatcggggtttgaaccccggtcataacgtcc 11081043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 35069001 - 35068907
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaattt 127  Q
    ||||||| ||||| |||||  | ||||||||||||||||||||| | |||||||||   || ||||| ||||||| |||||| | | ||||||||    
T  35069001 agatagacgagatggcaaagccgtcataaactcacacacacaaagtggaggtattggaattcgaacctcgatcatgacgtccggcctaacaattt 35068907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 17540099 - 17540203
Alignment:
Q  54 catcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactagaa 153  Q
    ||||||||| |||| |||||||| | ||||||| | |||| |||||||| |||| |||||  | | ||||||||||||||||||   |||||| |||| |    
T  17540099 catcataaa-tcacgcacacaaagttgaggtatcggggttcgaaccccggtcatgacgtctggcctaacaatttcggcatttttactagttgagctagga 17540197  T
Q  154 cttatg 159  Q
    ||||||    
T  17540198 cttatg 17540203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 45751028 - 45751133
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    |||||||||||||  ||||| |||||||||||| || ||| ||||||||||||  | ||||  ||||||||| || ||||     | |||||||||||||    
T  45751028 agatagatgagatgacaaaaccatcataaactcccatacataaaatagaggtaccggggttctaaccccgattatgacgtataacctaacaatttcggca 45751127  T
Q  133 tttttg 138  Q
    ||||||    
T  45751128 tttttg 45751133  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 12502827 - 12502727
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||||| | |||  ||||||||||||||||||||||| | ||||||  |  ||| ||||||| ||||| |||||| | | ||||||||| |||    
T  12502827 agatagaggagatggtaaagccatcataaactcacacacacaaagttgaggtaccggagttcgaaccccaatcatgacgtccggcctaacaatttcagca 12502728  T
Q  133 t 133  Q
    |    
T  12502727 t 12502727  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 13979745 - 13979837
Alignment:
Q  59 taaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaactag 151  Q
    |||||||||||||||||| | ||||| ||| | || ||||| |  |||| |||||  |||  ||||||||| ||||||||| |||||||||||    
T  13979745 taaactcacacacacaaagtggaggtgttgggattcgaacctcagtcatgacgtctagtctgacaatttcgacatttttgtcagttgaactag 13979837  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 41651185 - 41651097
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    ||||| ||| ||||||||||||||| |||||  |||||  | | || ||||||||||||| ||||||   | |||||||||||||||||    
T  41651185 caaaaccattataaactcacacacataaaatgaaggtaccgggattcgaaccccgatcatgacgtccaacctaacaatttcggcatttt 41651097  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 42631002 - 42631089
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    |||| |||| |||||||||||||||| || | ||||||| | |||| |||||||||||||  | ||| | | |||||||||||||||||    
T  42631002 caaagtcattataaactcacacacac-aagtggaggtatcggggttcgaaccccgatcatggcatccggcctaacaatttcggcatttt 42631089  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 6525951 - 6525891
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcata 108  Q
    |||| |||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||    
T  6525951 caaagtcatcataaactcacacacacaaagtggaggtattggggttcgaaccccgatcata 6525891  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 22792125 - 22792241
Alignment:
Q  47 gcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttga 146  Q
    |||||||||||||||||||||||||||||| | ||||| | | |||| |||||||  |||  ||||||   | |||||||||||||||||||  ||||||    
T  22792125 gcaaaatcatcataaactcacacacacaaagtggaggtgtcggggttcgaacccctgtcaagacgtccgacctaacaatttcggcatttttgccagttga 22792224  T
Q  147 actagaacttatgggac 163  Q
     |||| |||| ||||||    
T  22792225 gctaggacttgtgggac 22792241  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 35362960 - 35362832
Alignment:
Q  35 atagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatt 134  Q
    ||||| ||||||||||| |||||||||| ||||||||||||| | || |||  |  |||||||||| |||||| || |||  |  |||||||||  ||||    
T  35362960 atagacgagatagcaaagtcatcataaattcacacacacaaagtggaagtaccggagtttgaaccctgatcatgacatccgattcaacaatttcaacatt 35362861  T
Q  135 tttgtaagttgaactagaacttatgggac 163  Q
    ||  | |||||| ||||||||||||||||    
T  35362860 ttaattagttgagctagaacttatgggac 35362832  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 10165658 - 10165556
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| || |||||||| |||| |||||||||||||||| || | ||||||  | |||| |||||||||||||  | ||| ||| |||||||||||||    
T  10165658 agatagacgaaatagcaaagtcattataaactcacacacac-aagtggaggtaccggggttcgaaccccgatcatggcatccggtctaacaatttcggca 10165560  T
Q  133 tttt 136  Q
    ||||    
T  10165559 tttt 10165556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 11408500 - 11408369
Alignment:
Q  33 agatagatgagatagcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggca 132  Q
    ||||||| ||||  |||||| ||||||||||||||||||||||| |  ||||| || | || |||| ||||| || |||| |  || |||||||| | ||    
T  11408500 agatagacgagaaggcaaaaccatcataaactcacacacacaaagtgaaggtactgggattcgaactccgattatgacgttcgatctaacaattttgaca 11408401  T
Q  133 tttttgtaagttgaactagaacttatgggaca 164  Q
    ||||||  |||||| |||| ||||||||||||    
T  11408400 tttttgctagttgagctaggacttatgggaca 11408369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 9599425 - 9599321
Alignment:
Q  47 gcaaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttga 146  Q
    ||||| ||||||||| |||||||||||||| | ||||||     ||||||||||||||||  |||||  ||  |||||||||| ||||||||| ||||||    
T  9599425 gcaaagtcatcataagctcacacacacaaagtggaggtaccagagtttgaaccccgatcaagacgtctggtttaacaatttcgacatttttgtcagttga 9599326  T
Q  147 actag 151  Q
     ||||    
T  9599325 gctag 9599321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 972611 - 972718
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaa 147  Q
    |||| |||| ||||||||||||||||||  ||||||||  | |||| |||||| | ||||| | |||   | |||||||||| ||||||||| |||||||    
T  972611 caaagtcattataaactcacacacacaag-tagaggtaccggggttcgaaccctggtcatagcatccgacctaacaatttcgacatttttgtcagttgaa 972709  T
Q  148 ctagaactt 156  Q
    |||| ||||    
T  972710 ctaggactt 972718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 14569690 - 14569734
Alignment:
Q  34 gatagatgagatagcaaaatcatcataaactcacacacacaaaat 78  Q
    ||||||||| ||  ||||||||| |||||||||||||||||||||    
T  14569690 gatagatgaaatgacaaaatcataataaactcacacacacaaaat 14569734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 19332 - 19440
Alignment:
Q  49 aaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttttgtaagttgaac 148  Q
    |||||||||||||||| ||||  ||||||| ||||||| | |||| ||||||| ||||| |||||| | | |||||||||  ||||||||  ||||||||    
T  19332 aaaatcatcataaacttacac--acaaaatggaggtatcggggttcgaaccccaatcatgacgtccggcctaacaatttcaacatttttgccagttgaac 19429  T
Q  149 tagaacttatg 159  Q
    ||| |||||||    
T  19430 taggacttatg 19440  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 42987 - 43022
Alignment:
Q  41 gagatagcaaaatcatcataaactcacacacacaaa 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  42987 gagatagcaaaatcatcataaactcacacacacaaa 43022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 3811 - 3899
Alignment:
Q  48 caaaatcatcataaactcacacacacaaaatagaggtattgaggtttgaaccccgatcataacgtcctgtcaaacaatttcggcatttt 136  Q
    ||||| ||| ||||||||||||||| |||||  |||||  | | || ||||||||||||| ||||||   | |||||||||||||||||    
T  3811 caaaaccattataaactcacacacataaaatgaaggtaccgggattcgaaccccgatcatgacgtccaacctaacaatttcggcatttt 3899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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