View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10241_low_1 (Length: 868)
Name: NF10241_low_1
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10241_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 1 - 852
Target Start/End: Original strand, 43585050 - 43585909
Alignment:
| Q |
1 |
ttaccatgataagatatttcattgaagaaagtttgagttatggaaaccaaacactt--------tgtacttttgcagctaagttgacatcaggtgcagct |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43585050 |
ttaccatgataagatatttcattgaagaaagtttgagttatggaaaccaaacacttaaaaactttgtacttttgcagctaagttgacatcaggtgcagct |
43585149 |
T |
|
| Q |
93 |
cttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585150 |
cttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacc |
43585249 |
T |
|
| Q |
193 |
cagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggttccatagtagcatgctt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43585250 |
cagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggttccatagtggcatgctt |
43585349 |
T |
|
| Q |
293 |
tctcctcaagtatgccacaggaggcttggtatgtttatcattcttgcatcacaagtttcatacctttttgaattttaaaacatcaatagttccataactg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585350 |
tctcctcaagtatgccacaggaggcttggtatgtttatcattcttgcatcacaagtttcatacctttttgaattttaaaacatcaatagttccataactg |
43585449 |
T |
|
| Q |
393 |
attgtatgctatgtatttattttcagacaattcctatccacagtgttgcttctggagttggagctggtgaaggagttgtgacagagattatcataacatt |
492 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585450 |
attgtgtgctatgtatttgttttcagacaattcctatccacagtgttgcttctggagttggagctggtgaaggagttgtgacagagattatcataacatt |
43585549 |
T |
|
| Q |
493 |
tggattggtgtacacagtgtatgccacagcagctggtcctaagaaagggtcattagggacaattgcaccaattgctattggtttgattgttggtgccaat |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43585550 |
tggattggtgtacacagtgtatgccacagcagctgatcctaagaaagggtcattagggacaattgcaccaattgctattggtttgattgttggtgccaat |
43585649 |
T |
|
| Q |
593 |
atcttagctgcaggaccattctctggtgggtcaatgaatccggcacgttcattcgggcctgcggttgtaagtggtgactaccataacaactggatctatt |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
43585650 |
atcttagctgcaggaccattctctggtgggtcaatgaatccggcacgttcattcgggcctgcagttttaagtggtgactaccataacaactggatctatt |
43585749 |
T |
|
| Q |
693 |
gggttggacctcttattggtggtggtttggctggtgtcatctatagctatgtcttcatgccctcagaccatgtacctttggctagtgatttttgatttga |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585750 |
gggttggacctcttattggtggtggtttggctggtgtcatctatagctatgtcttcatgccctcagaccatgtacctttggctagtgatttttgatttga |
43585849 |
T |
|
| Q |
793 |
tcgaggttgttttgtagcttttgtgatttgtgttcctccccaataaaatggagatctatt |
852 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
43585850 |
ttgaggttgttttgtagcttttgtgatttgtgttcctcgccaataaactggagatctatt |
43585909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 63 - 329
Target Start/End: Complemental strand, 4190315 - 4190049
Alignment:
| Q |
63 |
tttgcagctaagttgacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttg |
162 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| || || ||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||| |
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|
| T |
4190315 |
tttgcaggtaagttgacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttg |
4190216 |
T |
|
| Q |
163 |
gagccaacatatctggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgc |
262 |
Q |
| |
|
| |||||||| |||||||| ||||||||||| ||||| |||||||| |||||| |||| |||||||| || ||||||||||||||||||||||||||||| |
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| T |
4190215 |
gtgccaacatttctggtggtcatgtcaaccctgctgtcacctttggattggctgttggtggacagattaccatcctcactggtatcttctactggattgc |
4190116 |
T |
|
| Q |
263 |
acaacttcttggttccatagtagcatgctttctcctcaagtatgccacaggaggcttggtatgttta |
329 |
Q |
| |
|
|| |||||||| ||||| || ||||| ||||| ||| ||| || ||| |||||||||||| ||||| |
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|
| T |
4190115 |
tcagcttcttggatccattgttgcatgttttcttctccagtttgtcactggaggcttggtaagttta |
4190049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 463 - 752
Target Start/End: Complemental strand, 4189283 - 4188994
Alignment:
| Q |
463 |
aggagttgtgacagagattatcataacatttggattggtgtacacagtgtatgccacagcagctggtcctaagaaagggtcattagggacaattgcacca |
562 |
Q |
| |
|
||||||||| || || || |||||||||||||| ||||| |||||||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||| |
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|
| T |
4189283 |
aggagttgttactgaaataatcataacatttggtttggtatacacagtttatgccacagcagctgatccaaagaaagggtcaataggcacaattgcaccc |
4189184 |
T |
|
| Q |
563 |
attgctattggtttgattgttggtgccaatatcttagctgcaggaccattctctggtgggtcaatgaatccggcacgttcattcgggcctgcggttgtaa |
662 |
Q |
| |
|
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||| ||||||||||| |||||| | || || |||||||| ||||| | |
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|
| T |
4189183 |
attgccattggtttcattgttggtgccaacatattggctgcaggcccattctctggcgggtcaatgaacccggcaagatcttttgggcctgcagttgtta |
4189084 |
T |
|
| Q |
663 |
gtggtgactaccataacaactggatctattgggttggacctcttattggtggtggtttggctggtgtcatctatagctatgtcttcatgc |
752 |
Q |
| |
|
|||| | | |||| |||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||| || |||| ||||||| |
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|
| T |
4189083 |
gtggaaatttccatgacaactggatctattgggctgggcctcttattggtggtggtttggctgggcttatctatggcaatgtgttcatgc |
4188994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 476 - 702
Target Start/End: Original strand, 3929981 - 3930207
Alignment:
| Q |
476 |
gagattatcataacatttggattggtgtacacagtgtatgccacagcagctggtcctaagaaagggtcattagggacaattgcaccaattgctattggtt |
575 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||||||||| || || || || ||| | || ||||||||||| ||||||||||| | |
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|
| T |
3929981 |
gagattatcataacatttggattggtttacactgtttatgccacagcagctgaccccaaaaagggctcaattggaacaattgcacccattgctattgggt |
3930080 |
T |
|
| Q |
576 |
tgattgttggtgccaatatcttagctgcaggaccattctctggtgggtcaatgaatccggcacgttcattcgggcctgcggttgtaagtggtgactacca |
675 |
Q |
| |
|
| |||| |||||||| |||||||| || || |||||| |||||| |||||||| ||||| || |||||||| || || || || ||||| ||| |
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|
| T |
3930081 |
tcgttgtcggtgccaacatcttagccgccggtccattcagtggtggttcaatgaacccggctcgctcattcggcccagctgtggttagtggaaactttgc |
3930180 |
T |
|
| Q |
676 |
taacaactggatctattgggttggacc |
702 |
Q |
| |
|
| | ||||||||||||||||||||||| |
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|
| T |
3930181 |
tgataactggatctattgggttggacc |
3930207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 3929549 - 3929665
Alignment:
| Q |
164 |
agccaacatatctggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgca |
263 |
Q |
| |
|
||||||||| || ||||||||| | ||||||||||| || ||||| || || ||||| || | ||||| ||||| |||||| ||||||| |||||||| |
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| T |
3929549 |
agccaacatctcaggtggacatttgaacccagctgttacttttggattagccattggaggcaacatcaccatcctaactggtctcttctattggattgcc |
3929648 |
T |
|
| Q |
264 |
caacttcttggttccat |
280 |
Q |
| |
|
||| | ||||| ||||| |
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|
| T |
3929649 |
caattgcttggctccat |
3929665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 23339461 - 23339534
Alignment:
| Q |
135 |
tttgctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctttgg |
208 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
23339461 |
tttgcactttttgttgctgtctctgttggtgctaacatttctggtggacatgtcaaccctgctgtcacttttgg |
23339534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 7655586 - 7655635
Alignment:
| Q |
144 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
193 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7655586 |
tttgttgccgtttctgttggagcaaacatatctggtggacatgtgaaccc |
7655635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 41418527 - 41418460
Alignment:
| Q |
138 |
gctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctt |
205 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||| |
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|
| T |
41418527 |
gctctctttgttgctgtctccgttggtgctaacatctccggtggacatgtcaaccccgctgtcacctt |
41418460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 52103130 - 52103081
Alignment:
| Q |
144 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
193 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
52103130 |
tttgtggctgtttctgttggtgcaaacatttctggtggacatgtgaaccc |
52103081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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