View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10241_low_14 (Length: 217)
Name: NF10241_low_14
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10241_low_14 |
 | |
|
| [»] scaffold0514 (1 HSPs) |
| | |
|
| [»] scaffold0470 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 6811290 - 6811499
Alignment:
| Q |
1 |
acattaaacaagttatgacaattctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6811290 |
acattaaacaagttatgacaattctttcata----atggttgttttgaaggagagacaatgaacattgaagaggaaaatcatggtggttcaatagaaacc |
6811385 |
T |
|
| Q |
101 |
gcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6811386 |
gcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgata |
6811485 |
T |
|
| Q |
201 |
tgagagggaacttt |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6811486 |
tgagagggaacttt |
6811499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6840742 - 6840953
Alignment:
| Q |
1 |
acattaaacaagttatgaca--attctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaa |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||| |
|
|
| T |
6840742 |
acattaaacaagttatgacacaattctttcatatttcatggttgttttgaaagagagacaatgaacactgaagtggaaaatcatggtggttcaaccgaaa |
6840841 |
T |
|
| Q |
99 |
ccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatga |
198 |
Q |
| |
|
|| || | | || |||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
6840842 |
ccccaactattggggaaccaaagaaaggttggagaaaggtattagaagggatagggagttggttgtcctacaaagacaaggag---aaatggttggatga |
6840938 |
T |
|
| Q |
199 |
tatgagagggaactt |
213 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
6840939 |
tatgcgagggaactt |
6840953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6621209 - 6621420
Alignment:
| Q |
1 |
acattaaacaagttatgacaat--tctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaa |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
6621209 |
acattaaacaagttatgacaatgatctttaatattttatggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaa |
6621308 |
T |
|
| Q |
99 |
ccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatga |
198 |
Q |
| |
|
||||| |||| ||||| |||||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| || ||| ||||||| ||| || |
|
|
| T |
6621309 |
ccgcactgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagtca---gggacaaatggttggagga |
6621405 |
T |
|
| Q |
199 |
tatgagagggaactt |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6621406 |
tatgagagggaactt |
6621420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6595395 - 6595606
Alignment:
| Q |
1 |
acattaaacaagttatgacaat--tctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaa |
98 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||| || |||| || ||||| || |||| |||| ||||||| ||||| |
|
|
| T |
6595395 |
acattaaacaagttatgacactaatctttaatatttcatggttgttttgaaggagaaacgatgaacaatgaagtggcaaattatggaggttcaacagaaa |
6595494 |
T |
|
| Q |
99 |
ccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatga |
198 |
Q |
| |
|
||||| ||||| ||||| |||||||||| |||||||||| | |||| |||| ||||||| |||| |||||| ||| |||| ||||||| ||| || |
|
|
| T |
6595495 |
ccgcaccgaataaggaatcaaagaaaggatggagaaaggtaatagagaagatacggagttggttgtcctacaaaaaca---aggacaaatggttggagga |
6595591 |
T |
|
| Q |
199 |
tatgagagggaactt |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6595592 |
tatgagagggaactt |
6595606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 6632255 - 6632387
Alignment:
| Q |
2 |
cattaaacaagttatgacaattctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccg |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||| || | ||| ||| |||||||||||||||| ||||||| |
|
|
| T |
6632255 |
cattaaacaagttatgacaattcttacatatttcatgattgttttgaatggcagacaatgaacaatcaagtggataatcatggtggttcaacagaaaccc |
6632354 |
T |
|
| Q |
102 |
cagcgaatgaggaaccaaagaaaggttggagaa |
134 |
Q |
| |
|
| | ||| || ||| | ||||||||||||||| |
|
|
| T |
6632355 |
taaccaataagaaacaagagaaaggttggagaa |
6632387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 6835415 - 6835548
Alignment:
| Q |
4 |
ttaaacaagttatgacaattctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgca |
103 |
Q |
| |
|
||||| ||| ||||||||| ||| ||||||||| ||||||||||||| ||||||| | || | ||| ||| ||| ||||| |||||| | ||||| || |
|
|
| T |
6835415 |
ttaaaaaagatatgacaatcattttatatttcatttttgttttgaaggaaagacaataaacaatcaagtggataatgatggtcgttcaacaaaaacccca |
6835514 |
T |
|
| Q |
104 |
gcgaatgaggaaccaaagaaaggttggagaaagg |
137 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
6835515 |
tcgagtgaggaaccaaagaaaggttggagaaagg |
6835548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 6807488 - 6807609
Alignment:
| Q |
13 |
ttatgacaattctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgag |
112 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| || | ||||||| || | ||| ||| |||||||||||||||| ||||||| | | ||| || |
|
|
| T |
6807488 |
ttatgacaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtggttcaacagaaaccctaaccaataag |
6807587 |
T |
|
| Q |
113 |
gaaccaaagaaaggttggagaa |
134 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
6807588 |
aaacaagagaaaggttggagaa |
6807609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1015 - 804
Alignment:
| Q |
1 |
acattaaacaagttatgacaat--tctttcatatttcatggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaa |
98 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
1015 |
acattaaacaagttataacaatgatctttaatattttatggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaa |
916 |
T |
|
| Q |
99 |
ccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatga |
198 |
Q |
| |
|
||||| ||||| ||||| |||||||||| |||||||| | |||||| |||| ||||||| |||| |||||||| | ||| ||||||| ||| || |
|
|
| T |
915 |
ccgcaccgaataaggaatcaaagaaaggatggagaaatgtattagagaagatacggagttggttgtcctacaaagata---gggacaaatggttggagga |
819 |
T |
|
| Q |
199 |
tatgagagggaactt |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
818 |
tatgagagggaactt |
804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 10664 - 10838
Alignment:
| Q |
36 |
atggttgttttgaaggagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaa |
135 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||| |||||||||||| ||||||| |||||||||| |||| ||||| |||||||||| |||||||| |
|
|
| T |
10664 |
atggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgcactgaataaggaatcaaagaaaggatggagaaa |
10763 |
T |
|
| Q |
136 |
ggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactt |
213 |
Q |
| |
|
|| |||||| |||| ||||||| |||| ||||||| || ||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
10764 |
ggtattagagaagatacggagttggttgtcctacaaagtca---gggacaaatggttggaggatatgagagggaactt |
10838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10618 - 10659
Alignment:
| Q |
30 |
tatttcatggttgttttgaaggagagacaatgagcattgaag |
71 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
10618 |
tatttcatggttgttttgaaggagaaacaatgaacaatgaag |
10659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University