View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10241_low_2 (Length: 549)

Name: NF10241_low_2
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10241_low_2
NF10241_low_2
[»] chr1 (36 HSPs)
chr1 (12-534)||(31745095-31745616)
chr1 (314-460)||(40377012-40377158)
chr1 (313-460)||(7549813-7549960)
chr1 (322-435)||(36393479-36393592)
chr1 (314-435)||(50974564-50974685)
chr1 (328-460)||(45584509-45584641)
chr1 (314-460)||(31652593-31652738)
chr1 (313-460)||(44719151-44719298)
chr1 (343-435)||(4039621-4039713)
chr1 (314-435)||(5851530-5851649)
chr1 (330-436)||(25302066-25302172)
chr1 (359-460)||(25095579-25095680)
chr1 (322-457)||(34596118-34596250)
chr1 (349-437)||(45753443-45753531)
chr1 (314-408)||(12148289-12148383)
chr1 (351-460)||(34445639-34445748)
chr1 (322-430)||(12636305-12636414)
chr1 (322-435)||(40203076-40203189)
chr1 (352-435)||(5115634-5115717)
chr1 (351-457)||(28672315-28672420)
chr1 (316-437)||(5787434-5787554)
chr1 (321-403)||(42850094-42850176)
chr1 (328-405)||(50222611-50222688)
chr1 (348-435)||(33744159-33744246)
chr1 (314-409)||(48947225-48947320)
chr1 (319-460)||(13954126-13954271)
chr1 (348-430)||(39241430-39241512)
chr1 (348-404)||(48253319-48253375)
chr1 (331-410)||(44442270-44442349)
chr1 (349-434)||(3338051-3338137)
chr1 (382-436)||(5597710-5597764)
chr1 (398-460)||(27396102-27396164)
chr1 (315-413)||(50328308-50328405)
chr1 (348-441)||(14774091-14774184)
chr1 (359-432)||(28171517-28171590)
chr1 (351-395)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (314-460)||(49446583-49446730)
chr4 (321-460)||(44646522-44646661)
chr4 (322-435)||(44647879-44647992)
chr4 (315-459)||(42197007-42197150)
chr4 (339-460)||(6316821-6316942)
chr4 (329-441)||(9802621-9802732)
chr4 (317-432)||(20390023-20390138)
chr4 (328-443)||(42844030-42844145)
chr4 (314-434)||(41468080-41468200)
chr4 (338-432)||(33982423-33982517)
chr4 (320-410)||(44088286-44088376)
chr4 (348-456)||(25196110-25196218)
chr4 (325-418)||(50115059-50115149)
chr4 (359-460)||(40480205-40480306)
chr4 (348-435)||(12103864-12103951)
chr4 (322-435)||(24395194-24395308)
chr4 (329-419)||(49144774-49144864)
chr4 (314-395)||(38494748-38494829)
chr4 (381-460)||(28165362-28165442)
chr4 (349-431)||(39727579-39727660)
chr4 (348-460)||(50086432-50086543)
chr4 (359-432)||(34235910-34235984)
chr4 (329-395)||(36721591-36721657)
chr4 (317-426)||(49769110-49769219)
chr4 (359-418)||(31871090-31871149)
chr4 (330-460)||(52373050-52373181)
chr4 (313-395)||(41370157-41370239)
chr4 (330-419)||(1696194-1696283)
chr4 (362-435)||(53919863-53919936)
chr4 (343-435)||(27346293-27346385)
chr4 (362-437)||(5387947-5388022)
chr4 (332-434)||(51105918-51106020)
chr4 (381-430)||(27706954-27707003)
chr4 (329-437)||(27981368-27981477)
chr4 (399-460)||(44088211-44088272)
chr4 (331-460)||(52650697-52650826)
chr4 (348-436)||(11875452-11875539)
chr4 (361-460)||(23230272-23230372)
chr4 (348-460)||(47560596-47560707)
[»] chr3 (29 HSPs)
chr3 (314-460)||(34758899-34759045)
chr3 (314-459)||(54911988-54912133)
chr3 (314-435)||(18399149-18399271)
chr3 (322-459)||(30687077-30687214)
chr3 (321-460)||(27968170-27968307)
chr3 (321-460)||(52340118-52340257)
chr3 (330-448)||(38388694-38388812)
chr3 (349-460)||(28434481-28434591)
chr3 (359-460)||(779710-779810)
chr3 (343-460)||(38704969-38705086)
chr3 (326-424)||(7754772-7754871)
chr3 (322-435)||(4033026-4033138)
chr3 (322-413)||(19898100-19898191)
chr3 (348-415)||(55110042-55110109)
chr3 (322-459)||(25548196-25548333)
chr3 (357-431)||(43749507-43749581)
chr3 (349-419)||(53433211-53433281)
chr3 (377-432)||(1680511-1680566)
chr3 (348-439)||(2831538-2831629)
chr3 (351-435)||(39976721-39976804)
chr3 (340-415)||(54955783-54955859)
chr3 (382-436)||(11404700-11404754)
chr3 (359-409)||(40546348-40546398)
chr3 (128-189)||(9213512-9213572)
chr3 (423-460)||(29497248-29497285)
chr3 (415-460)||(29611990-29612035)
chr3 (348-404)||(21490626-21490682)
chr3 (359-423)||(30463992-30464056)
chr3 (377-417)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (317-460)||(8247037-8247180)
chr5 (315-460)||(3263717-3263862)
chr5 (314-457)||(19692696-19692840)
chr5 (321-432)||(5356295-5356406)
chr5 (314-434)||(35395184-35395304)
chr5 (315-460)||(10051700-10051845)
chr5 (319-460)||(28793305-28793446)
chr5 (321-458)||(1354345-1354481)
chr5 (314-432)||(22473432-22473551)
chr5 (339-435)||(21582367-21582463)
chr5 (351-453)||(14042440-14042542)
chr5 (337-434)||(31889611-31889709)
chr5 (377-460)||(4725897-4725979)
chr5 (319-405)||(142350-142436)
chr5 (383-437)||(22871913-22871967)
chr5 (351-436)||(3758194-3758279)
chr5 (351-423)||(26663642-26663714)
chr5 (351-423)||(26935237-26935309)
chr5 (322-457)||(14474998-14475133)
chr5 (382-460)||(27650866-27650944)
chr5 (381-434)||(37976444-37976497)
chr5 (382-436)||(12933327-12933381)
chr5 (377-423)||(24241210-24241256)
chr5 (351-408)||(24241039-24241096)
chr5 (313-373)||(43145883-43145943)
[»] chr2 (27 HSPs)
chr2 (313-460)||(8789826-8789973)
chr2 (315-460)||(44941072-44941216)
chr2 (317-460)||(20682990-20683133)
chr2 (321-435)||(8773670-8773784)
chr2 (339-437)||(4238341-4238438)
chr2 (314-437)||(18053008-18053130)
chr2 (322-435)||(42945012-42945125)
chr2 (349-460)||(6761751-6761862)
chr2 (322-432)||(2393038-2393148)
chr2 (321-435)||(34546265-34546379)
chr2 (322-448)||(42966938-42967066)
chr2 (350-422)||(1070568-1070639)
chr2 (315-460)||(5961954-5962101)
chr2 (79-162)||(10069229-10069312)
chr2 (346-460)||(3882586-3882700)
chr2 (365-457)||(433551-433643)
chr2 (384-436)||(8898861-8898913)
chr2 (348-460)||(18227092-18227204)
chr2 (351-434)||(2825983-2826066)
chr2 (381-448)||(13442636-13442703)
chr2 (348-432)||(35228732-35228816)
chr2 (377-435)||(3199541-3199599)
chr2 (330-437)||(7271769-7271880)
chr2 (322-459)||(14102297-14102435)
chr2 (351-436)||(31448315-31448400)
chr2 (377-430)||(45212057-45212110)
chr2 (348-436)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (314-434)||(30412910-30413030)
chr7 (314-460)||(8170001-8170147)
chr7 (314-424)||(48137789-48137899)
chr7 (341-435)||(42493703-42493798)
chr7 (329-460)||(47507580-47507711)
chr7 (318-456)||(38452146-38452283)
chr7 (333-430)||(2964049-2964146)
chr7 (328-460)||(16878677-16878809)
chr7 (322-433)||(44391426-44391537)
chr7 (318-394)||(46684550-46684626)
chr7 (346-437)||(5248088-5248179)
chr7 (343-435)||(2741168-2741260)
chr7 (319-437)||(15034793-15034911)
chr7 (324-432)||(43670409-43670517)
chr7 (314-389)||(47305516-47305592)
chr7 (351-440)||(676400-676488)
chr7 (349-448)||(37352436-37352535)
chr7 (359-443)||(33887887-33887971)
chr7 (316-460)||(36015002-36015141)
chr7 (320-434)||(36285774-36285887)
chr7 (377-460)||(45375399-45375483)
chr7 (348-395)||(15995924-15995971)
chr7 (348-457)||(35754017-35754126)
chr7 (332-408)||(44495238-44495314)
chr7 (348-395)||(14574768-14574815)
chr7 (359-466)||(35599837-35599944)
chr7 (348-437)||(31477085-31477175)
chr7 (348-461)||(10031945-10032058)
chr7 (385-438)||(25120218-25120271)
chr7 (322-389)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (314-460)||(31206280-31206426)
chr8 (322-430)||(38956884-38956992)
chr8 (313-437)||(5217747-5217869)
chr8 (330-435)||(45368729-45368834)
chr8 (321-434)||(5020051-5020162)
chr8 (322-433)||(20169716-20169827)
chr8 (319-460)||(9632898-9633040)
chr8 (381-463)||(33636685-33636767)
chr8 (331-457)||(39691121-39691247)
chr8 (322-435)||(7044329-7044442)
chr8 (360-460)||(24103087-24103187)
chr8 (368-460)||(39932721-39932813)
chr8 (322-460)||(10335020-10335159)
chr8 (397-435)||(36819755-36819793)
chr8 (385-460)||(37564393-37564468)
chr8 (397-459)||(2124141-2124203)
chr8 (400-460)||(5968377-5968437)
chr8 (348-460)||(22209376-22209488)
[»] chr6 (13 HSPs)
chr6 (314-435)||(12383008-12383129)
chr6 (322-435)||(16442075-16442188)
chr6 (337-432)||(8176324-8176419)
chr6 (351-434)||(12307821-12307904)
chr6 (331-460)||(31702747-31702874)
chr6 (349-457)||(7465451-7465558)
chr6 (316-391)||(22695473-22695549)
chr6 (388-459)||(22696000-22696071)
chr6 (333-431)||(35241410-35241509)
chr6 (322-435)||(6048268-6048381)
chr6 (133-185)||(32045160-32045211)
chr6 (351-432)||(26311807-26311889)
chr6 (359-460)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (359-460)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Original strand, 31745095 - 31745616
Alignment:
Q  12 atggacatcaaaaaagagtctataccaattaccaaaataatagactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatcta 111  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31745095 atggacctcaaaaaagagtctataccaattaccaaaataatatactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctg 31745194  T
Q  112 gtccaattatttaactagattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtattttatagtaagagaatgagattcaa 211  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31745195 gtccaattatttaactagatacatcaacttttattgatttaaatgtctttttataaaaaggaccggatggagtattttatagtaagagaataagattcaa 31745294  T
Q  212 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttcgtccatatacttttcttgctgattaccaaggcac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31745295 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttggtccatatacttttcttgctgattaccgaggcac 31745394  T
Q  312 taggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 411  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745395 taggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 31745494  T
Q  412 ttcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaattaacnnnnnnnattaactcaacactgttcttgtcataattaaatattt 511  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31745495 ttcttttagaatctttaaagagtgcctcggaggcactagttaacaagacaattaac-ttttttattaactcaacactgttcttgtcataattaaatattt 31745593  T
Q  512 ttgttatgacatgttttattgat 534  Q
     ||||||||||||||||||||||    
T  31745594 atgttatgacatgttttattgat 31745616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 40377158 - 40377012
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    ||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||    
T  40377158 ggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttctt 40377059  T
Q  414 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| ||||| |||||||||| |   | |||||| |||||||||||    
T  40377058 cttttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 313 - 460
Target Start/End: Complemental strand, 7549960 - 7549813
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 412  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||||| |||||||||||   ||||||||||||||||||| ||||||||| |||| |    
T  7549960 aggcactagctaaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttct 7549861  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||  |||  |||||||||||| ||  | |||| |||||||||||    
T  7549860 tcttttgaaattcttaaagagtgtcccgaggacactcgttaacaagac 7549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 36393592 - 36393479
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| |||||||  |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  422 atctttaaagagtg 435  Q
    ||| ||||||||||    
T  36393492 atccttaaagagtg 36393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 50974564 - 50974685
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||||||| ||    
T  50974564 ggcactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataatttttt 50974663  T
Q  414 cttttagaatctttaaagagtg 435  Q
    |||||  |||| || |||||||    
T  50974664 cttttgaaatccttcaagagtg 50974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 328 - 460
Target Start/End: Complemental strand, 45584641 - 45584509
Alignment:
Q  328 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 427  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||   |||  |||||||| ||||| |||||||||||||| ||||||| ||||| ||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  428 aaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||| | ||| |||| | |||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagac 45584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 31652738 - 31652593
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||  |||  |||||||||||||| |||||||||||||| ||    
T  31652738 ggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttctt 31652639  T
Q  414 cttttagaatctttaaagagtgtct-cggaggcactggttaacaagac 460  Q
     ||||  |||| ||||||||| ||| ||||| |||| |||||||||||    
T  31652638 -ttttgaaatccttaaagagt-tctccggagacactcgttaacaagac 31652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 460
Target Start/End: Complemental strand, 44719298 - 44719151
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 412  Q
    ||||||||||||||  |||||||| |||| ||||||||||||| |||||||||| ||||||   ||||| ||||||| ||||| |||||||||||| |||    
T  44719298 aggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatat 44719199  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    | |||| ||||| ||||| |||||| ||| | |||| |||||||||||    
T  44719198 ttttttggaatccttaaaaagtgtcccggggacactcgttaacaagac 44719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 4039621 - 4039713
Alignment:
Q  343 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||| ||||||| |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtg 4039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 314 - 435
Target Start/End: Complemental strand, 5851649 - 5851530
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||||| ||| |||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| ||    
T  5851649 ggcactagataaagcctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttctt 5851552  T
Q  414 cttttagaatctttaaagagtg 435  Q
    |||||  |||| ||||||||||    
T  5851551 cttttgaaatccttaaagagtg 5851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 436
Target Start/End: Complemental strand, 25302172 - 25302066
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 429  Q
    ||||||| |||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| ||||| ||| |||| || |||| ||||| ||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  430 agagtgt 436  Q
    |||||||    
T  25302072 agagtgt 25302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 460
Target Start/End: Complemental strand, 25095680 - 25095579
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||| |||| | |||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtcatggagacactcgctaacaag 25095581  T
Q  459 ac 460  Q
    ||    
T  25095580 ac 25095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 457
Target Start/End: Original strand, 34596118 - 34596250
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||||||  |||||| | |||||| |||||||||||||||||| || ||||||||||||||| ||  |||||||||||||| ||||||||||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaatt--ttataaaataatttcttcttttaga 34596215  T
Q  422 atctttaaagagtgtctcggaggcactggttaacaa 457  Q
    ||| |||| || |||| |||||||||  ||||||||    
T  34596216 atccttaatgaatgtc-cggaggcacccgttaacaa 34596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 45753531 - 45753443
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 437  Q
    ||||||| |||||||||||||||| || ||| |||||||||||| || || | ||||||||| ||||||||||||||||||||||||||    
T  45753531 tgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaagagtgtc 45753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 12148289 - 12148383
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 408  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |  |||| |||||||| ||||| | ||||||||||    
T  12148289 ggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 460
Target Start/End: Complemental strand, 34445748 - 34445639
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 450  Q
    |||| |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||   ||| |||||| |    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  451 ttaacaagac 460  Q
    ||||||||||    
T  34445648 ttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 430
Target Start/End: Original strand, 12636305 - 12636414
Alignment:
Q  322 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    ||||| |||||||||||||| || |  |||||||||||||||||||||| || |  |||||||||| |||||||| | ||||||| |||||||||||| |    
T  12636305 ttaagacctttaaatagtaatttttttatgaaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttgg 12636404  T
Q  421 aatctttaaa 430  Q
    |||| |||||    
T  12636405 aatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 40203076 - 40203189
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    |||||| |||||||| |||||||    |||||||||||||||||||||||| |  ||| ||||||||||||||| |||| ||||||||| || ||||  |    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgta 40203175  T
Q  422 atctttaaagagtg 435  Q
    ||| ||||||||||    
T  40203176 atccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 5115634 - 5115717
Alignment:
Q  352 aaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||| |||||||| ||||||| |  ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5115634 aaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 28672315 - 28672420
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 450  Q
    ||||||||||||||||||||||  | |||| |||||||||||||| ||| |||||||||  || |||||||||  || |||||||||||||| |||||      
T  28672315 aaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgctt-aagagtgtctcggatgcactca 28672413  T
Q  451 ttaacaa 457  Q
    |||||||    
T  28672414 ttaacaa 28672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 5787434 - 5787554
Alignment:
Q  316 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 415  Q
    |||||||||| | |||||||   ||||||||||  |||||||||||||| ||||||| |  ||| ||||||||| ||| | |||||||||| ||| ||||    
T  5787434 cactagttaaagtctttaaaatataacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttct 5787533  T
Q  416 tttagaatctttaaagagtgtc 437  Q
    ||| ||||| ||||||||||||    
T  5787534 ttt-gaatccttaaagagtgtc 5787554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 42850094 - 42850176
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaa 403  Q
    |||||| |||||||||  ||| ||||||| ||||||| | |||| |||||||||| ||||||||||||| ||||| |||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataaa 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 50222611 - 50222688
Alignment:
Q  328 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 405  Q
    |||||||||||||| || | ||||||||| ||||||||||||||| || |||  |||||||||| ||| |||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttttttataaaat 50222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 33744159 - 33744246
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||| || |||||||||||||| || ||||||||||||||||||| | | |||||||||  || ||||| |||  ||||||||||    
T  33744159 atgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtg 33744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 48947320 - 48947225
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 409  Q
    |||||||||||||| |||||||| ||||||| | |||||||| |||||||||| ||||| |  ||| ||||  |||||| || ||| |||||||||    
T  48947320 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 460
Target Start/End: Original strand, 13954126 - 13954271
Alignment:
Q  319 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 418  Q
    ||||||||||||||||||   || ||||  ||||||| | |||||||| ||||| |  |||| |||| ||||| ||| ||||||| |||||| ||||| |    
T  13954126 tagttaaggcctttaaatgaaaatttattgtgaaaatgtatgtaatca-tgcattggaaatcaaaatttttgatttttttataaagtaatttcttcttct 13954224  T
Q  419 agaatctttaaagagtgt-----ctcggaggcactggttaacaagac 460  Q
    |||||| |||||||||||     |||||||||||  |||||||||||    
T  13954225 agaatccttaaagagtgttccacctcggaggcacccgttaacaagac 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 39241430 - 39241512
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    ||||||| |||||||||||||||||||| |||  ||||||||   ||| ||||||||||| ||||| ||||| |||| |||||    
T  39241430 atgaaaacatgtgtaatcaatgcatcgaaaattaaaatatttattttttttataaaataaattatttttttaaaatccttaaa 39241512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 48253375 - 48253319
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 404  Q
    |||||||||||| ||||||||| || || |||||||||| |||||||| ||||||||    
T  48253375 atgaaaatatgtataatcaatgtattgaaaatcgaaatagttgacttttttataaaa 48253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 44442349 - 44442270
Alignment:
Q  331 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 410  Q
    |||||||||||||| | || |||||||||||| | |||| || || ||| ||||||||||||||| ||| | ||||||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataattt 44442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 434
Target Start/End: Original strand, 3338051 - 3338137
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagt 434  Q
    ||||||| | |||||||||||||| || ||| |||||| || | ||| || || ||||||||| |||||||||||| ||||||||||    
T  3338051 tgaaaatttatgtaatcaatgcattgaaaattgaaatacttaattttttttatgaaataatttcttcttttagaatgtttaaagagt 3338137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 5597764 - 5597710
Alignment:
Q  382 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||    
T  5597764 aaatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtgt 5597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 27396164 - 27396102
Alignment:
Q  398 tataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||||||| || |||||||||  ||||||| |||||||| || ||| |||||||||||    
T  27396164 tataaaataatttcttattttagaattcttaaagaatgtctcggtggtacttgttaacaagac 27396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 50328308 - 50328405
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||| ||||| | |||||||  ||||||||||| ||||||||| |||| || | ||| | |||| |||||||| | ||| |||||||||||||||||    
T  50328308 gcactaattaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatattt-aattttttataaaataatttatt 50328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 441
Target Start/End: Complemental strand, 14774184 - 14774091
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgg 441  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||| | |  |||||||| ||| |||||||||  ||||||| | ||||||    
T  14774184 atgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattattttagaatgcttaaagaatatctcgg 14774091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 28171517 - 28171590
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 432  Q
    |||||| |||||||  | ||| ||||||||| ||||| |||||||||||||| ||||||| ||||  |||||||    
T  28171517 tgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 15549686 - 15549642
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||    
T  15549686 aaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttt 15549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 314 - 460
Target Start/End: Original strand, 49446583 - 49446730
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |    
T  49446583 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttct 49446682  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||| ||||| |||||||||| | ||  |||||| |||||||||||    
T  49446683 tcttttggaatccttaaagagtgccccgagggcacttgttaacaagac 49446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 321 - 460
Target Start/End: Original strand, 44646522 - 44646661
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||      
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  421 aatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||| ||||||| || | ||| |||||| |||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagac 44646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 44647879 - 44647992
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||| ||    
T  44647879 ttaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttcttcttttgga 44647978  T
Q  422 atctttaaagagtg 435  Q
    ||||||||||||||    
T  44647979 atctttaaagagtg 44647992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 459
Target Start/End: Complemental strand, 42197150 - 42197007
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 414  Q
    ||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||||| |||    
T  42197150 gcactagttaaagtctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttc 42197051  T
Q  415 ttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    ||||||||| ||||||||||||  || ||||||| ||||||||||    
T  42197050 ttttagaat-tttaaagagtgttccgaaggcactcgttaacaaga 42197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 339 - 460
Target Start/End: Original strand, 6316821 - 6316942
Alignment:
Q  339 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 438  Q
    |||||||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||||||||| |||| |||||||  ||||||||||||||| |     
T  6316821 taacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagagtgccc 6316920  T
Q  439 cggaggcactggttaacaagac 460  Q
    |||||||||| |||||||||||    
T  6316921 cggaggcactcgttaacaagac 6316942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 329 - 441
Target Start/End: Original strand, 9802621 - 9802732
Alignment:
Q  329 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 428  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  9802621 ctttaaagaataacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaat-ttta 9802719  T
Q  429 aagagtgtctcgg 441  Q
    |||||||||||||    
T  9802720 aagagtgtctcgg 9802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 20390138 - 20390023
Alignment:
Q  317 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 416  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||| || ||    
T  20390138 actagttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgtt 20390039  T
Q  417 ttagaatctttaaaga 432  Q
    || ||||  |||||||    
T  20390038 ttggaattcttaaaga 20390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 443
Target Start/End: Complemental strand, 42844145 - 42844030
Alignment:
Q  328 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 427  Q
    ||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||  | ||||  |||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcgttttttgaaatcttt 42844046  T
Q  428 aaagagtgtctcggag 443  Q
     ||||||||| |||||    
T  42844045 caagagtgtcccggag 42844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 41468200 - 41468080
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||  |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||    
T  41468200 ggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttctt 41468101  T
Q  414 cttttagaatctttaaagagt 434  Q
    ||||| ||||  |||||||||    
T  41468100 cttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  338 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 432  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||  |||| |||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 44088376 - 44088286
Alignment:
Q  320 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 410  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||    
T  44088376 agttaaggactttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 25196218 - 25196110
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    ||||||| ||||||||| ||||  | |  |||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  25196218 atgaaaacatgtgtaattaatgtcttggaaatcaaaatatttgacttttttataaattaattttttcttttagaatccttaaagagtgtttcggaggcac 25196119  T
Q  448 tggttaaca 456  Q
    | |||||||    
T  25196118 tcgttaaca 25196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 50115149 - 50115059
Alignment:
Q  325 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 418  Q
    |||||||||||| ||||||||||||   |||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| |||||||    
T  50115149 aggcctttaaatggtaacttatcat---aatatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 40480205 - 40480306
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  40480205 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 40480304  T
Q  459 ac 460  Q
    ||    
T  40480305 ac 40480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 12103864 - 12103951
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||||||||||||||||||  | |  ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  12103864 atgaaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtg 12103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 24395194 - 24395308
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatg-catcgagaatcgaaatatttgac-tttattataaaataatttattctttta 419  Q
    ||||| |||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24395194 ttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttaga-aatcgaaatatttgaccttttttataaattaatttcttctttta 24395292  T
Q  420 gaatctttaaagagtg 435  Q
    ||||| ||||||||||    
T  24395293 gaatccttaaagagtg 24395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 419
Target Start/End: Complemental strand, 49144864 - 49144774
Alignment:
Q  329 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 419  Q
    |||||||| |||| || |||| ||||||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||| ||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttta 49144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 38494748 - 38494829
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    |||||||||||||| ||||| ||  ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  38494748 ggcactagttaaggtctttatatgataatttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgccttt 38494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 460
Target Start/End: Complemental strand, 28165442 - 28165362
Alignment:
Q  381 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |||| | |||||| |||||||||||    
T  28165442 gaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagac 28165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 39727579 - 39727660
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 431  Q
    ||||||| | |||||||||||||||   ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  39727579 tgaaaatttatgtaatcaatgcatcagaaattgaaatatttgacttt-ttatagaataatttattcttttagaatccttaaag 39727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 460
Target Start/End: Original strand, 50086432 - 50086543
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| ||| ||| | |||||||  || |||| |||| |||||||||| || ||| |||||    
T  50086432 atgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttcccgg-ggcac 50086530  T
Q  448 tggttaacaagac 460  Q
    | |||||||||||    
T  50086531 tcgttaacaagac 50086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 34235984 - 34235910
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaaga 432  Q
    |||||||||||||| || ||| ||||| ||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaaga 34235910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 36721591 - 36721657
Alignment:
Q  329 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    ||||||||||||| || | ||| |||| |||||||||||||||| |||||| |||||||||||||||    
T  36721591 ctttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttt 36721657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 49769110 - 49769219
Alignment:
Q  317 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 416  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||||| | ||   |||  |||| ||  ||||| ||||||||| |||| |||||    
T  49769110 actacttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttctt 49769209  T
Q  417 ttagaatctt 426  Q
    ||| ||||||    
T  49769210 ttaaaatctt 49769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 31871090 - 31871149
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 418  Q
    ||||||||||||||||  ||| ||||||||| ||||| |||||||||||||| |||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 460
Target Start/End: Original strand, 52373050 - 52373181
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatcttta 428  Q
    |||||||||||| || |  ||||||| ||||||||  |||||| || |||   ||||||||||||| || || ||||||||| || ||| | |||| |||    
T  52373050 tttaaatagtaattttttctgaaaatttgtgtaatttatgcattgaaaattataatatttgactttttttatgaaataatttcttatttcaaaatcctta 52373149  T
Q  429 aagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||| |||||| ||| |||||||||||    
T  52373150 aagagtgtcccggaggtactcgttaacaagac 52373181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 41370157 - 41370239
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    |||||||  |||||| |||| |||||||| || | |||||||| |||||||||||||||| || ||| ||||||||| |||||    
T  41370157 aggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttt 41370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 1696194 - 1696283
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 419  Q
    ||||||||||||||| |  ||||||| | ||||||||||||||||  ||| |||||||||| |||| ||||  |||||| | ||||||||    
T  1696194 tttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 53919936 - 53919863
Alignment:
Q  362 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||||||||||||  ||| ||||| ||||||||| ||||| ||||||||||||||||  |||  ||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 27346385 - 27346293
Alignment:
Q  343 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||| ||||| ||| |||| |||||| |   |||| |||| ||||||||| ||||||||||| || || |||||||||| ||||||||||    
T  27346385 ttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttagaatccttaaagagtg 27346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 5387947 - 5388022
Alignment:
Q  362 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 437  Q
    ||||||||||| || ||||||||||||| | ||| |  ||||||||||| |||||||| |||||||| | ||||||    
T  5387947 aatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttcttttaaaatctttataaagtgtc 5388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 51106020 - 51105918
Alignment:
Q  332 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 431  Q
    ||||||||||||  | ||||||||||| ||||||  || || || |||  |||||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  51106020 taaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaag 51105921  T
Q  432 agt 434  Q
    |||    
T  51105920 agt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 27706954 - 27707003
Alignment:
Q  381 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    ||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706954 gaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 437
Target Start/End: Complemental strand, 27981477 - 27981368
Alignment:
Q  329 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt-agaatcttt 427  Q
    ||||||||||||||||   ||| ||||||||||||| |||| || || ||| ||||||||| | ||| | ||||| |||||| || |||| | ||| |||    
T  27981477 ctttaaatagtaactttgtatgtaaatatgtgtaattaatgtattgaaaattgaaatatttaattttttcataaattaatttttttttttaaaaattttt 27981378  T
Q  428 aaagagtgtc 437  Q
    ||||||||||    
T  27981377 aaagagtgtc 27981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 44088272 - 44088211
Alignment:
Q  399 ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||||||| |||||||||||| |||||| | ||   |||||||||| |||||||||||    
T  44088272 ataaaataatttcttcttttagaatttttaaaaattgctccggaggcactcgttaacaagac 44088211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 52650697 - 52650826
Alignment:
Q  331 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    ||||||||||| || | |||||||  |||||||||| || || || ||| ||||  |||||| ||  || | |||||||| ||  ||||| || ||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaa 52650796  T
Q  431 gagtgtctcggaggcactggttaacaagac 460  Q
    ||||||  |||||||||| |||||||||||    
T  52650797 gagtgttccggaggcactcgttaacaagac 52650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 11875452 - 11875539
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||| ||| |||||||||||| || |||  |||||||| | |||  ||||||||||||| || ||||| || |||||||||||||    
T  11875452 atgaaaatgtgtataatcaatgcattgaaaatt-aaatatttaatttttgtataaaataatttctttttttaaaagctttaaagagtgt 11875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 460
Target Start/End: Original strand, 23230272 - 23230372
Alignment:
Q  361 taatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    |||||||||||| || ||| |||| |||| ||||| || ||  |||||||| | ||||| ||||  |||||||||||||||||| |||| ||||| ||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttttcatggaataatttctccttttggaatgcttaaagagtgtctcggagacactcgttaataaga 23230371  T
Q  460 c 460  Q
    |    
T  23230372 c 23230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 460
Target Start/End: Complemental strand, 47560707 - 47560596
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    ||||||||  |||||||||||| ||  | |||| ||| |||||| ||| ||| |||||||||  || |||| ||||  ||||||||||||||| || |||    
T  47560707 atgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgattttttta-aaaataattgcttattttggaatgattaaagagtgtctcgaagacac 47560609  T
Q  448 tggttaacaagac 460  Q
    | |||||||||||    
T  47560608 tcgttaacaagac 47560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 34759045 - 34758899
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||  || ||||||||||| ||||| |||||||||||||  ||    
T  34759045 ggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattactt 34758946  T
Q  414 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| ||||| |||||||||| | |||||||||| |||||||||||    
T  34758945 ctttttgaatccttaaagagtgccccggaggcactcgttaacaagac 34758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 314 - 459
Target Start/End: Original strand, 54911988 - 54912133
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| |||||||||| ||||||    
T  54911988 ggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttatt 54912087  T
Q  414 cttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    ||||| ||||  ||||||||||  |||| | |||| ||||||||||    
T  54912088 cttttggaattcttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 18399149 - 18399271
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttat 412  Q
    |||| |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||| |    
T  18399149 ggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttct 18399248  T
Q  413 tcttttagaatctttaaagagtg 435  Q
    |||||| ||||| ||||||||||    
T  18399249 tcttttggaatccttaaagagtg 18399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 322 - 459
Target Start/End: Original strand, 30687077 - 30687214
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||||||||||| | |||| || | ||||| ||| |||||| ||||||| ||||||||||    
T  30687077 ttaaggtctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttaga 30687176  T
Q  422 atctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    ||| ||||||||| |||| ||| |||| ||||||||||    
T  30687177 atccttaaagagtatctctgagacactcgttaacaaga 30687214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 321 - 460
Target Start/End: Complemental strand, 27968307 - 27968170
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 419  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||| |||| |||| |||| |||||||     
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttg 27968209  T
Q  420 gaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| ||||| |||||| ||| |||||| |||||||||||    
T  27968208 gaatccttaaaaagtgtc-cgg-ggcactcgttaacaagac 27968170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 321 - 460
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 419  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| |||||  ||| ||||||||| |||| ||| |||     
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  420 gaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| |||||||||| |||||| | ||| |||||||||||    
T  52340218 gaatccttaaagagtgcctcgga-gaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 330 - 448
Target Start/End: Complemental strand, 38388812 - 38388694
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 429  Q
    |||||||||||| || | || |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  430 agagtgtctcggaggcact 448  Q
    | |||| | ||||||||||    
T  38388712 atagtgccccggaggcact 38388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 349 - 460
Target Start/End: Complemental strand, 28434591 - 28434481
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 448  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||| |||  |||||    
T  28434591 tgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttt-ttatgaaataatttattctcttaaaatccttaaagagtgtcccgggagcact 28434493  T
Q  449 ggttaacaagac 460  Q
     |||||||||||    
T  28434492 cgttaacaagac 28434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 779710 - 779810
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    |||||| ||||||| |  |||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  779710 tgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtgtct-ggaggcactcgttaacaag 779808  T
Q  459 ac 460  Q
    ||    
T  779809 ac 779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 38704969 - 38705086
Alignment:
Q  343 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgga 442  Q
    |||||||  |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||| ||||||| ||||  |||||||||   ||||     
T  38704969 ttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattcttaaagagtacttcggg 38705068  T
Q  443 ggcactggttaacaagac 460  Q
    |||||| |||||||||||    
T  38705069 ggcactcgttaacaagac 38705086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 7754772 - 7754871
Alignment:
Q  326 ggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatc 424  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||||||||| | || ||||||| |||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 4033138 - 4033026
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||||||   || ||||||||||||| |||||||||| |||||||  ||||||||| ||||| ||| |||||||||||||| || |||||||    
T  4033138 ttaagtcctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttctttttttaga 4033040  T
Q  422 atctttaaagagtg 435  Q
    ||| ||||| ||||    
T  4033039 atccttaaaaagtg 4033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 19898100 - 19898191
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    ||||| |||||| || |||| || | ||||||||||||||||||||||||| || ||| ||||||||||| |||  ||||||||||||||||    
T  19898100 ttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataatttatt 19898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 55110109 - 55110042
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 415  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  55110109 atgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttct 55110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 459
Target Start/End: Original strand, 25548196 - 25548333
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 420  Q
    ||||| |||||||||  ||| || | |||||||||||||||||||||||||    ||| ||||||||| || ||| |||||||||| ||| |||||||||    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  421 aatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    | || ||||||||||| |||| || ||| ||||||||||    
T  25548296 agtccttaaagagtgt-tcgggggtactcgttaacaaga 25548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 43749507 - 43749581
Alignment:
Q  357 tgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 431  Q
    ||||||||||||  || || ||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  43749507 tgtgtaatcaatatatagaaaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaag 43749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 53433211 - 53433281
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 419  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| |||||||| ||||||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 1680511 - 1680566
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 432  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  1680511 aatcaaaatatttgacttttttataaattaatttattctttttgaatccttaaaga 1680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 2831629 - 2831538
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 439  Q
    |||||||  ||| |||||| |||||  | ||| ||||||||||||||||||| |||||||||| ||  ||| ||||| ||||||||||||||    
T  2831629 atgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctc 2831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 39976804 - 39976721
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||||| |||||||||||| || || ||| |||| |||||||||| ||| ||||||||| ||| ||||||||| || ||||||||    
T  39976804 aaaatacgtgtaatcaatgtattgaaaatagaaacatttgactttttta-aaaataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 54955783 - 54955859
Alignment:
Q  340 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttat-tataaaataatttattct 415  Q
    ||||| |||||||||||| ||||||  ||||||| | |||| |||||||||| ||| | ||||||||||||||||||    
T  54955783 aacttttcatgaaaatatatgtaatttatgcatcaaaaatcaaaatatttgattttttctataaaataatttattct 54955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 11404754 - 11404700
Alignment:
Q  382 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||| ||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  11404754 aaatatttaacttttttataaaataatttatttttttttaatcttaaaagagtgt 11404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 409  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 9213572 - 9213512
Alignment:
Q  128 agattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtatttt 189  Q
    |||| ||| |||||||||||| | ||||||||||| ||||| |||| |||||||||||||||    
T  9213572 agatacatcaacttttgttgactaaaatgtctttt-ataaataggaccggagggagtatttt 9213512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 29497248 - 29497285
Alignment:
Q  423 tctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29497248 tctttaaagaatgtctcggaggcactcgttaacaagac 29497285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 29612035 - 29611990
Alignment:
Q  415 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  29612035 ttttagaatgtttaaagagtgtcccgggggcactcgttaacaagac 29611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 21490626 - 21490682
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 404  Q
    |||||||||||||| ||||||| || || ||| ||||||||||||||| ||| ||||    
T  21490626 atgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgacttttttacaaaa 21490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 30463992 - 30464056
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 423  Q
    ||||||||||||||  | ||| ||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 37775371 - 37775411
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttt 417  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  37775371 aatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 317 - 460
Target Start/End: Complemental strand, 8247180 - 8247037
Alignment:
Q  317 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 416  Q
    ||||||||||| |||||||| |||||||||||||||||  ||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||| |||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttctt 8247081  T
Q  417 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  8247080 ttggaatccttaaagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 460
Target Start/End: Complemental strand, 3263862 - 3263717
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 414  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| |||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttc 3263763  T
Q  415 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||  |||  |||||||||| | |||| ||||| |||||||||||    
T  3263762 ttttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 314 - 457
Target Start/End: Complemental strand, 19692840 - 19692696
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 412  Q
    |||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||||| |    
T  19692840 ggcactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttct 19692741  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaa 457  Q
    ||||||  ||||||||||||||| | ||| | |||| ||||||||    
T  19692740 tcttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 5356295 - 5356406
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||| || |||| |    
T  5356295 gttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttgg 5356394  T
Q  421 aatctttaaaga 432  Q
     ||| |||||||    
T  5356395 tatccttaaaga 5356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 35395304 - 35395184
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||| |||||  ||||| ||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| ||| ||    
T  35395304 ggcactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttctt 35395205  T
Q  414 cttttagaatctttaaagagt 434  Q
    ||||| ||||| |||||||||    
T  35395204 cttttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 315 - 460
Target Start/End: Complemental strand, 10051845 - 10051700
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 414  Q
    |||||||||||| ||||||||| ||||||||| |||||||  ||| ||||||||||||||  |||  |||||||||||||| ||||||||| |||| |||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttc 10051746  T
Q  415 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| |||| |||||||||| ||  | | |||| |||||||||||    
T  10051745 ttttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 319 - 460
Target Start/End: Complemental strand, 28793446 - 28793305
Alignment:
Q  319 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 418  Q
    |||||||||  ||||||| |||| ||||||| ||||||| |||||| |||||||||  ||||||||||||||||||| ||||||||| |||| |||||||    
T  28793446 tagttaaggtatttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttctttt 28793347  T
Q  419 agaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
     ||||| |||||||| |   |||| ||||| |||||||||||    
T  28793346 ggaatccttaaagagcgcaccggaagcactcgttaacaagac 28793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 1354345 - 1354481
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    |||||||||||||||  |||| ||||||||||||||| | ||||||||  ||    ||||||||||||| ||||| |||||||||||||| || ||||||    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  421 aatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    ||| | | |||||||||||||||||||| |||||||||    
T  1354445 aat-tcttaagagtgtctcggaggcacttgttaacaag 1354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 314 - 432
Target Start/End: Complemental strand, 22473551 - 22473432
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttat 412  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||   |||  ||||||||||  ||| |||||||||||||| |    
T  22473551 ggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttct 22473452  T
Q  413 tcttttagaatctttaaaga 432  Q
    ||||||  |||| |||||||    
T  22473451 tcttttgaaatccttaaaga 22473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 435
Target Start/End: Complemental strand, 21582463 - 21582367
Alignment:
Q  339 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||||||||||||| ||||| |||| || |||   ||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  21582463 taacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaaagtg 21582367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 14042542 - 14042440
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 450  Q
    ||||| ||| |||||||||||| |  |||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || ||||| |||| |    
T  14042542 aaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagtatcccggagacactcg 14042443  T
Q  451 tta 453  Q
    |||    
T  14042442 tta 14042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 434
Target Start/End: Complemental strand, 31889709 - 31889611
Alignment:
Q  337 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatctttaaagagt 434  Q
    |||||||| | |||||||||||||||||||||||||    ||| ||||||||| || ||| ||||||| |||||| ||||||||||||| |||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 4725897 - 4725979
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||| ||||||||| ||||||||||||||||||||||  |||| ||||| ||||| |||| | |||| |||||||||||    
T  4725897 aatcgaaatctttgacttt-ttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagac 4725979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 142350 - 142436
Alignment:
Q  319 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 405  Q
    |||||||| ||||||||  |||||||||||| ||| ||||||||||||||| |||   ||| ||||||||||| ||| |||||||||    
T  142350 tagttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 22871967 - 22871913
Alignment:
Q  383 aatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 437  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtc 22871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 3758279 - 3758194
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||| |||| || ||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||| ||| ||||||||||||    
T  3758279 aaaaaatgtatattcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 26663714 - 26663642
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 423  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26663714 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 26935309 - 26935237
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 423  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26935309 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 457
Target Start/End: Original strand, 14474998 - 14475133
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||| |||||||||||| |  ||||||| | ||||||||| |||||   ||| |||||||||||| || ||||| |||||||| |||||||| |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  422 atctttaaagagtgtctcggaggcactggttaacaa 457  Q
    ||  || ||||| | | |||| ||||| ||||||||    
T  14475098 atgcttgaagagagccccggaagcacttgttaacaa 14475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 27650866 - 27650944
Alignment:
Q  382 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||| ||||| ||||| |||||||| || |||| |||| ||||||||||||  |||||| ||| |||||||||||    
T  27650866 aaatatttaacttttttatataataatttctttttttggaatgtttaaagagtgttccggaggtactcgttaacaagac 27650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 37976497 - 37976444
Alignment:
Q  381 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 434  Q
    ||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||    
T  37976497 gaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaagagt 37976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 12933381 - 12933327
Alignment:
Q  382 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||||||||| ||||||||||||||||| ||||  |||| || ||||||||    
T  12933381 aaatatttgactttcttataaaataatttattattttgaaatcgttgaagagtgt 12933327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 24241210 - 24241256
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttttagaat 423  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  24241210 aatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 24241039 - 24241096
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 408  Q
    ||||||||| ||||||||| ||  | ||| ||||||||||||||| ||||||||||||    
T  24241039 aaaatatgtataatcaatgtattaaaaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 43145943 - 43145883
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatc 373  Q
    |||||||| ||||| |||||||||||||| || |  ||||||| | |||||||||||||||    
T  43145943 aggcactatttaagacctttaaatagtaattttttttgaaaatttatgtaatcaatgcatc 43145883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 313 - 460
Target Start/End: Complemental strand, 8789973 - 8789826
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 412  Q
    ||||||| ||||||| |||||||  |||||||| |||||||||||||||||||||||||||   |||| |||||||| ||||| |||||||||||||| |    
T  8789973 aggcactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttct 8789874  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||||||||||||||||||| || | | ||| |||||||||||    
T  8789873 tcttttagaatctttaaagagtgtcccgaaagtactcgttaacaagac 8789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 460
Target Start/End: Original strand, 44941072 - 44941216
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 414  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||  ||||||||| ||| ||||| |||||| ||| ||| |||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttc 44941171  T
Q  415 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||||| |||||||||||||| | |||||| |||||||||||    
T  44941172 ttttagaatccttaaagagtgtctcag-ggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 460
Target Start/End: Original strand, 20682990 - 20683133
Alignment:
Q  317 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 416  Q
    ||||||||| |  |||| || |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||  ||| |||||    
T  20682990 actagttaaagtttttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttctt 20683089  T
Q  417 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  20683090 ttggaatccttaaagagtgtcccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 8773670 - 8773784
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||||||   |||| |||||||||||||| |||||||||||||| |||||||||    
T  8773670 gttaaggtctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttag 8773769  T
Q  421 aatctttaaagagtg 435  Q
    |||||||||||||||    
T  8773770 aatctttaaagagtg 8773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 4238341 - 4238438
Alignment:
Q  339 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 437  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  4238341 taacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtc 4238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 18053008 - 18053130
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||| |||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||| ||    
T  18053008 ggcattagttaaggcctttaaag-gtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttctt 18053106  T
Q  414 cttttagaatctttaaagagtgtc 437  Q
    |||||  |||| ||||||||||||    
T  18053107 cttttgaaatccttaaagagtgtc 18053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 42945012 - 42945125
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||  |  ||||||||||||||| ||| | |||||||||| | |||||||| |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  422 atctttaaagagtg 435  Q
    ||| ||||| ||||    
T  42945112 atccttaaaaagtg 42945125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 460
Target Start/End: Original strand, 6761751 - 6761862
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 448  Q
    ||||||| | |||||||||||||| |  ||| ||||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||| |||||| |||||    
T  6761751 tgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcact 6761850  T
Q  449 ggttaacaagac 460  Q
     |||||||||||    
T  6761851 tgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 322 - 432
Target Start/End: Original strand, 2393038 - 2393148
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||| ||||||||||   ||||||| ||||| ||||||||  | ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  2393038 ttaagacctttatatagtaactttgtatgaaaacatgtgaaatcaatgtcttgagaatcaaaatatttgacttttttataaattaatttcttcttttaga 2393137  T
Q  422 atctttaaaga 432  Q
    ||| |||||||    
T  2393138 atccttaaaga 2393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 34546265 - 34546379
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    |||||| || ||||||  ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||| ||||||| |||||| ||| ||| |    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  421 aatctttaaagagtg 435  Q
    |||| | ||||||||    
T  34546365 aatcctcaaagagtg 34546379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 322 - 448
Target Start/End: Complemental strand, 42967066 - 42966938
Alignment:
Q  322 ttaaggcctttaaatagtaa-cttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattctttta 419  Q
    ||||| ||||||||||||||  || |  ||||||| | |||||||||||||||| |||| ||||||||| || ||| |||| ||||||||| ||||||||    
T  42967066 ttaagacctttaaatagtaatttttttttgaaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttctttta 42966967  T
Q  420 gaatctttaaagagtgtctcggaggcact 448  Q
    | ||  |||||||||||||||||||||||    
T  42966966 gtattcttaaagagtgtctcggaggcact 42966938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 1070639 - 1070568
Alignment:
Q  350 gaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 422  Q
    ||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| |||||||||||||    
T  1070639 gaaaatatgtgtaatcaat-cattgaaaatcaaaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 315 - 460
Target Start/End: Original strand, 5961954 - 5962101
Alignment:
Q  315 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataattta-t 412  Q
    |||||| ||||| ||||||||||||||||  |  ||||||| | |||||||||||||| |  ||| ||||||||| | ||| || ||  |||| |||  |    
T  5961954 gcactatttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaattgaaatatttaattttttttatggaatatttttct 5962053  T
Q  413 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5962054 tcttttagaatgcttaaagagtgtctcggaggcactcgttaacaagac 5962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 10069312 - 10069229
Alignment:
Q  79 aaatatttaggttaacaaacgttaatggatctagtccaattatttaactagattcattaacttttgttgatttaaatgtctttt 162  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |||||| |||| ||| ||||||| |||| | |||||||||||    
T  10069312 aaatatttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacataaacttttattgactcaaatgtctttt 10069229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 3882700 - 3882586
Alignment:
Q  346 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggc 445  Q
    |||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |||||||  || |||||||||  |||||||||| | ||  |||    
T  3882700 tcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggc 3882601  T
Q  446 actggttaacaagac 460  Q
    ||| |||||||||||    
T  3882600 actcgttaacaagac 3882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 433551 - 433643
Alignment:
Q  365 caatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-ctcggaggcactggttaacaa 457  Q
    ||||||||| | |||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtgtcctcgg-ggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 8898861 - 8898913
Alignment:
Q  384 atatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaagggtgt 8898913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 460
Target Start/End: Complemental strand, 18227204 - 18227092
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    |||||||| | | |||||||||||| || |||||||||||||||||||  |  | |||||||  || ||||| ||| ||||||||||||  ||||| |||    
T  18227204 atgaaaatgtatttaatcaatgcattgaaaatcgaaatatttgacttttatgaagaataattacttattttataatgtttaaagagtgttccggagacac 18227105  T
Q  448 tggttaacaagac 460  Q
    | |||||||||||    
T  18227104 tcgttaacaagac 18227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 434
Target Start/End: Original strand, 2825983 - 2826066
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 434  Q
    ||||| |||||||||||||||| |  ||||||||||||| ||||| ||| |||||||||| || |||||| ||  |||||||||    
T  2825983 aaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 13442636 - 13442703
Alignment:
Q  381 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 448  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||   |||||||||||    
T  13442636 gaaatatttaactttttttataaaataatttattctttt-gaatctttaaagagtacttcggaggcact 13442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 35228816 - 35228732
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 432  Q
    ||||||||||||||||| |||||||    |||||||||||||||  || ||| |||||||||| |||||||  |||| |||||||    
T  35228816 atgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttcttttgaaatccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 3199541 - 3199599
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||| |||||||||| ||| |||||||||||||| || |||||||||  ||||||||||    
T  3199541 aatcaaaatatttgaattttttataaaataatttcttattttagaattattaaagagtg 3199599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 7271880 - 7271769
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac----tttattataaaataatttattcttttagaatct 425  Q
    |||||||  |||||| | |||||||||| |||||||||||||| |  |||  |||||||||||    ||| |||||| ||| ||| || ||||||||||     
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttctttttttagaatcc 7271781  T
Q  426 ttaaagagtgtc 437  Q
    ||||||||||||    
T  7271780 ttaaagagtgtc 7271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 459
Target Start/End: Original strand, 14102297 - 14102435
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 420  Q
    |||||| || ||| ||||||||  | |||||||  ||||||||||||| || |  ||||||||||||| || ||| || | ||||||||| || |||| |    
T  14102297 ttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttgg 14102396  T
Q  421 aatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
     || |||||||||||   |||||||||| ||||||||||    
T  14102397 catgtttaaagagtgctccggaggcactcgttaacaaga 14102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 31448315 - 31448400
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||| ||||| |||| ||||  |||| |||| ||| | ||| |||||||||||||| ||||||   ||||||||||||||||    
T  31448315 aaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttagaaatctttaaagagtgt 31448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 45212110 - 45212057
Alignment:
Q  377 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    |||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  45212110 aatcaaaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 33275918 - 33276005
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 436  Q
    |||||||| |||||| || ||| || || ||| ||||||||| ||||| ||| |||||||||| || |||||||||  |||||||||||    
T  33275918 atgaaaatgtgtgta-tctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 314 - 434
Target Start/End: Original strand, 30412910 - 30413030
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||    
T  30412910 ggcactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttctt 30413009  T
Q  414 cttttagaatctttaaagagt 434  Q
    |||||  |||| |||||||||    
T  30413010 cttttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 8170147 - 8170001
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||||| |||||||||||||| ||    
T  8170147 ggcactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttctt 8170048  T
Q  414 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| ||||| |||||||||||  |||  | ||| |||||||||||    
T  8170047 cttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 314 - 424
Target Start/End: Complemental strand, 48137899 - 48137789
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  48137899 ggcactagttaatgcttttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttctt 48137800  T
Q  414 cttttagaatc 424  Q
    ||||| |||||    
T  48137799 cttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 42493798 - 42493703
Alignment:
Q  341 acttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattcttttagaatctttaaagagtg 435  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtg 42493703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 460
Target Start/End: Complemental strand, 47507711 - 47507580
Alignment:
Q  329 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 428  Q
    |||||||| ||||||| ||||||||| ||||||||||||| |||||  ||| ||||| ||||| ||| ||||||||| |||| ||||||||||||| |||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  429 aagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||| | ||||| |||| |||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagac 47507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 318 - 456
Target Start/End: Complemental strand, 38452283 - 38452146
Alignment:
Q  318 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 417  Q
    ||||||||||||||||||   ||| |||| |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  38452283 ctagttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttt 38452184  T
Q  418 tagaatctttaaagagtgtctcggaggcactggttaaca 456  Q
    |  |||| ||||||| ||| |||| |||||| |||||||    
T  38452183 ttaaatccttaaagaatgt-tcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 2964146 - 2964049
Alignment:
Q  333 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||| | ||| |||||||||||||| |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaatctttaaa 2964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 460
Target Start/End: Complemental strand, 16878809 - 16878677
Alignment:
Q  328 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 427  Q
    |||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |  || | ||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttctctttattgaatcttt 16878710  T
Q  428 aaagagtgtctcggaggcactggttaacaagac 460  Q
    |||||||||| ||||  |||  |||||||||||    
T  16878709 aaagagtgtcccggaaacacctgttaacaagac 16878677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 420  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 44391524  T
Q  421 aatctttaaagag 433  Q
    |||||||||||||    
T  44391525 aatctttaaagag 44391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 46684550 - 46684626
Alignment:
Q  318 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt 394  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  46684550 ctagttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 437
Target Start/End: Complemental strand, 5248179 - 5248088
Alignment:
Q  346 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 437  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||| ||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagaatgtc 5248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 2741260 - 2741168
Alignment:
Q  343 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||    
T  2741260 ttattatgaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 15034793 - 15034911
Alignment:
Q  319 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 417  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||| |   |||||||||||||||||| |||||||||| ||| || | |    
T  15034793 tagttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgacttt-ttataaaatattttcttttct 15034891  T
Q  418 tagaatctttaaagagtgtc 437  Q
    | ||||| ||||||||||||    
T  15034892 tggaatccttaaagagtgtc 15034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 432
Target Start/End: Complemental strand, 43670517 - 43670409
Alignment:
Q  324 aaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 423  Q
    |||| |||||||| |||| ||||||| |||| || |||||||| |||||||| |||| |||| ||||| ||| ||||||||| |||| ||| |||| |||    
T  43670517 aaggtctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttcatttaaaat 43670418  T
Q  424 ctttaaaga 432  Q
    |||||||||    
T  43670417 ctttaaaga 43670409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 47305516 - 47305592
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaa-tcgaaatattt 389  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||    
T  47305516 ggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatctatggatcgaaaattcgaaatattt 47305592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 676400 - 676488
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcg 440  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||| |||  ||||||||  || ||||||||| ||||||||||||||||    
T  676400 aaaatatgtgtaatcaatgcatttaaaatcgaaatatttaacttt-ttaataaataattacttattttagaatgtttaaagagtgtctcg 676488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 37352436 - 37352535
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 448  Q
    ||||||| |||||||| ||||||| |  ||| ||||||||||||||| | ||  |||||||| || |||| ||||| ||||||| |||||||||||||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtctcggaggcact 37352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 443
Target Start/End: Original strand, 33887887 - 33887971
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggag 443  Q
    |||||||||||||| || ||| ||||||||||||||| ||| | |||||||  || |||| ||||  ||||||||||||||||||    
T  33887887 tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgtctcggag 33887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 36015002 - 36015141
Alignment:
Q  316 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 415  Q
    |||||||||||| |||||||  ||||||||     |||||| |||||||||||  || || ||| || |||||||| ||| |||||||||||||| || |    
T  36015002 cactagttaaggtctttaaaaggtaactta-----aaaatacgtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttt 36015096  T
Q  416 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||  |||| ||||||| |||| ||||| || | |||||||||||    
T  36015097 tttgaaatccttaaagaatgtcccggagacattcgttaacaagac 36015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 36285774 - 36285887
Alignment:
Q  320 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttt 418  Q
    ||||||| ||||||||  |||||||||||| ||||||  ||||||||||| ||||  |||| ||||||||||  ||| |||||||||  ||| |||||||    
T  36285774 agttaagtcctttaaaatgtaacttatcataaaaata--tgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttt 36285871  T
Q  419 agaatctttaaagagt 434  Q
    | ||| ||||||||||    
T  36285872 aaaatttttaaagagt 36285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 45375399 - 45375483
Alignment:
Q  377 aatcgaaatatttgactttattataaaataa-tttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||| |||||||| ||||| |||||| |||| ||| ||||||||||||| |||||||||| | |||||||||| ||||| |||||    
T  45375399 aatcaaaatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgccccggaggcactcgttaataagac 45375483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 15995971 - 15995924
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15995971 atgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaacttt 15995924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 457
Target Start/End: Complemental strand, 35754126 - 35754017
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    ||||||| ||||||||| ||||||| || |||||||||| |||| | | |||||||||||||| || ||||  |||  ||||||||||| || ||| |||    
T  35754126 atgaaaacatgtgtaattaatgcattgaaaatcgaaatacttgattattttataaaataatttctttttttgaaattcttaaagagtgtttcagagacac 35754027  T
Q  448 tggttaacaa 457  Q
    | ||| ||||    
T  35754026 tcgttgacaa 35754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 44495314 - 44495238
Alignment:
Q  332 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 408  Q
    |||||| |||||| | || ||||||||||||||||||| ||  | ||||||||||||| | ||| ||||||||||||    
T  44495314 taaataataacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataat 44495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 14574815 - 14574768
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 395  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  14574815 atgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaacttt 14574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 466
Target Start/End: Original strand, 35599837 - 35599944
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    |||| ||||||||| || | | ||| ||||||| ||| ||| | ||||||||  |  ||||| || |||||||||| ||||||||||||| |||||||||    
T  35599837 tgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatctcggaggcactcgttaacaag 35599936  T
Q  459 acaattaa 466  Q
    || |||||    
T  35599937 accattaa 35599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 31477175 - 31477085
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt-attcttttagaatctttaaagagtgtc 437  Q
    ||||||||||||||||||||||||| || |||| |  | |||||| || ||||| ||||||||  || |||||||||| ||||| ||||||    
T  31477175 atgaaaatatgtgtaatcaatgcattgaaaatcaatttttttgacgtttttatacaataatttcttttttttagaatccttaaatagtgtc 31477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 10031945 - 10032058
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    |||||||  |||||||||||||||| |  |||||||| |||| ||||| | | |||||||||  |  |||| ||||  |||||||||||| ||| |||||    
T  10031945 atgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcac 10032044  T
Q  448 tggttaacaagaca 461  Q
    | |||||| |||||    
T  10032045 tcgttaacgagaca 10032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 25120218 - 25120271
Alignment:
Q  385 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 438  Q
    ||||||||||| ||| |||||||||||||  |||  ||||||||||||||||||    
T  25120218 tatttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 27359466 - 27359398
Alignment:
Q  322 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt 389  Q
    ||||| ||||||||||||||||| |  ||||||| | ||||||||||||||| |  |||||||||||||    
T  27359466 ttaagacctttaaatagtaacttttttatgaaaacaagtgtaatcaatgcattggaaatcgaaatattt 27359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 31206426 - 31206280
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| |     
T  31206426 ggcattagttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttcta 31206327  T
Q  414 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| ||||| |||||||||  ||||  || ||| |||||||||||    
T  31206326 ctttttgaatccttaaagagtacctcgtggggactcgttaacaagac 31206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 322 - 430
Target Start/End: Complemental strand, 38956992 - 38956884
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||   |||||||||    
T  38956992 ttaaggtctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttaga 38956893  T
Q  422 atctttaaa 430  Q
    ||| |||||    
T  38956892 atccttaaa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 437
Target Start/End: Original strand, 5217747 - 5217869
Alignment:
Q  313 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 412  Q
    ||||||||||||||  ||||| || |||| ||||||| |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||    
T  5217747 aggcactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat 5217846  T
Q  413 tcttttagaatctttaaagagtgtc 437  Q
      |||| ||||| ||||||||||||    
T  5217847 --tttttgaatccttaaagagtgtc 5217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 330 - 435
Target Start/End: Original strand, 45368729 - 45368834
Alignment:
Q  330 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 429  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  430 agagtg 435  Q
    ||||||    
T  45368829 agagtg 45368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  321 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 420  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||| ||||  ||| ||||| ||||||||| ||||||||| |||| |||||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaat--gtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  421 aatctttaaagagt 434  Q
    |||| |||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 420  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 20169814  T
Q  421 aatctttaaagag 433  Q
    |||||||||||||    
T  20169815 aatctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 460
Target Start/End: Complemental strand, 9633040 - 9632898
Alignment:
Q  319 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta--ttctt 416  Q
    ||||||||| |||||||| | || |||| ||||||||||||||||||||||||||   |||| |||||||||||||| || || |||  ||||  || ||    
T  9633040 tagttaaggtctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgacttt-ttttataattttttattttttt 9632942  T
Q  417 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||  ||||||||||||||| | ||||| |||| |||||||||||    
T  9632941 ttgaaatctttaaagagtgacccggagacacttgttaacaagac 9632898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 33636767 - 33636685
Alignment:
Q  381 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaat 463  Q
    |||| |||||||||| |||| ||||||||| | ||||||||||  ||||||||||||||||  ||||| ||||| ||||||||    
T  33636767 gaaacatttgacttttttatgaaataatttctccttttagaatgcttaaagagtgtctcgggcgcactcgttaataagacaat 33636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 457
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  331 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    ||||||||||| || | |||||||| |||||| ||||||||| || ||| ||| ||||||||||| ||| | |||||||| ||  | | ||||  |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  431 gagtgtctcggaggcactggttaacaa 457  Q
    ||||||||||  |||||| ||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 7044329 - 7044442
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||| ||| ||||||   ||||||| | |||||||||| || |  | ||||||||| ||||||||| | ||||| |||||| ||||||||||    
T  7044329 ttaagacctttatataataactttgtatgaaaacacgtgtaatcaaagccttaaaaatcgaaatgtttgactttttaataaattaatttcttcttttaga 7044428  T
Q  422 atctttaaagagtg 435  Q
    ||| ||||||||||    
T  7044429 atccttaaagagtg 7044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 460
Target Start/End: Original strand, 24103087 - 24103187
Alignment:
Q  360 gtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    ||||||| |||||||  |||||||| ||||||| || | | |||||||||| || |||||||||  ||||||||||||||||| ||| | |||||| |||    
T  24103087 gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgtctcggaagcaatcgttaacgaga 24103186  T
Q  460 c 460  Q
    |    
T  24103187 c 24103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 39932721 - 39932813
Alignment:
Q  368 tgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||| || ||| ||||||||||||||| ||||  ||| |||  |||||||||||| |||||||||||| ||||||| | | |||||||||||    
T  39932721 tgcatggaaaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 460
Target Start/End: Original strand, 10335020 - 10335159
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 420  Q
    ||||||||||||||| |||| || |  ||||||| ||| |||| ||||||| || |||   ||||||||||||| || ||| |||||||||||||||| |    
T  10335020 ttaaggcctttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataatttattcttttgg 10335119  T
Q  421 aatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    |||  ||||||||||   || | ||||| |||||||||||    
T  10335120 aattcttaaagagtgctccgaatgcactcgttaacaagac 10335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 36819755 - 36819793
Alignment:
Q  397 ttataaaataatttattcttttagaatctttaaagagtg 435  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36819755 ttataaaataattttttcttttagaatctttaaagagtg 36819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 460
Target Start/End: Original strand, 37564393 - 37564468
Alignment:
Q  385 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||||| ||| | |||||||| ||  ||||| || ||||||||||||| | |||||||| |||||||||||    
T  37564393 tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 459
Target Start/End: Original strand, 2124141 - 2124203
Alignment:
Q  397 ttataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||   |||| ||||||||||    
T  2124141 ttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacactcgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 5968377 - 5968437
Alignment:
Q  400 taaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 460  Q
    ||||||||||  || ||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  5968377 taaaataattgcttgttttagaatgtttaaagagtgccctggaggcactcgttaacaagac 5968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 460
Target Start/End: Complemental strand, 22209488 - 22209376
Alignment:
Q  348 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 447  Q
    |||||||||| |||||||||||  | |  |||| |||||||| ||||| |||   |||||||  |||||||| |||  |||||||||||| ||||| |||    
T  22209488 atgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgtcccggagacac 22209389  T
Q  448 tggttaacaagac 460  Q
    | ||||| |||||    
T  22209388 ttgttaataagac 22209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 12383008 - 12383129
Alignment:
Q  314 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 413  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||||||| |     
T  12383008 ggcactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctc 12383107  T
Q  414 cttttagaatctttaaagagtg 435  Q
    |||||  |||  ||||||||||    
T  12383108 cttttgaaattcttaaagagtg 12383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 16442188 - 16442075
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | || |||| |||| ||||||||| ||||||| |||||||||||||||||    
T  16442188 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatattttgaaaatcaaaatgtttgacttttttataaactaatttattcttttaga 16442089  T
Q  422 atctttaaagagtg 435  Q
    ||||||||||||||    
T  16442088 atctttaaagagtg 16442075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 8176419 - 8176324
Alignment:
Q  337 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 432  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||| ||| | |||| ||||||||||||| |||||||    
T  8176419 agtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 12307904 - 12307821
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 434  Q
    |||||||||||||| |||| || || |||  |||||||||||||| |||||||||||||| |||||||  |||| |||||||||    
T  12307904 aaaatatgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  331 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 430  Q
    |||||||||||||| | || ||||||||||||||||||||||    |||  ||||| || ||||| |||||||||||||| |||||||  |||  |||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  431 gagtgtctcggaggcactggttaacaagac 460  Q
    ||||| | ||||  |||| |||||||||||    
T  31702847 gagtgccccgga--cactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 457
Target Start/End: Complemental strand, 7465558 - 7465451
Alignment:
Q  349 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 448  Q
    ||||||| | ||||||||||||||||  ||| ||||||||||||||| ||||  || ||||| |||||| |||||| ||||| |||| | ||| ||||||    
T  7465558 tgaaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtg-cccgggggcact 7465460  T
Q  449 ggttaacaa 457  Q
     ||||||||    
T  7465459 cgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 391
Target Start/End: Original strand, 22695473 - 22695549
Alignment:
Q  316 cactagttaaggcctttaaatagtaacttatcatgaaaa-tatgtgtaatcaatgcatcgagaatcgaaatatttga 391  Q
    |||| |||||||| ||||||| ||||||| | || |||| ||||||||||||||||||||| ||| |||||||||||    
T  22695473 cactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 22696000 - 22696071
Alignment:
Q  388 ttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 459  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||||  || |||||||| ||||||||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaaga 22696071  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  333 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt-tattataaaataatttattcttttagaatctttaaag 431  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| |||||||| | || | |||||||||||||| || ||||| |||| ||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 6048268 - 6048381
Alignment:
Q  322 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 421  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | |  |||  |||| ||| ||||| ||||||| |||||| ||||||||||    
T  6048268 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatatcttggaaattaaaatgtttcacttttttataaattaatttcttcttttaga 6048367  T
Q  422 atctttaaagagtg 435  Q
    || |||||||||||    
T  6048368 atttttaaagagtg 6048381  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 32045160 - 32045211
Alignment:
Q  133 cattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagta 185  Q
    |||||||||||||||| |||||| || ||||||||| ||||||||||||||||    
T  32045160 cattaacttttgttgagttaaatatc-ttttataaataggatcggagggagta 32045211  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 26311889 - 26311807
Alignment:
Q  351 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgact-ttattataaaataatttattcttttagaatctttaaaga 432  Q
    |||||||||||||| |||| || || |||| |||||||| ||  || ||||||| ||||||||||||| |||||| |||||||    
T  26311889 aaaatatgtgtaattaatgtattgaaaatcaaaatatttaaccatttttataaattaatttattctttcagaatccttaaaga 26311807  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 460
Target Start/End: Complemental strand, 30509387 - 30509286
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    |||||||||||||| || ||||||||| ||||| ||| ||| | |||||||  || |||| | ||  |||||||||||  ||||| |||| |||||||||    
T  30509387 tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaacaag 30509288  T
Q  459 ac 460  Q
    ||    
T  30509287 ac 30509286  T

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Target: scaffold0246 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 18144 - 18245
Alignment:
Q  359 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 458  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  18144 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 18243  T
Q  459 ac 460  Q
    ||    
T  18244 ac 18245  T

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