View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10241_low_3 (Length: 465)

Name: NF10241_low_3
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10241_low_3
NF10241_low_3
[»] chr4 (2 HSPs)
chr4 (329-449)||(27316307-27316428)
chr4 (282-322)||(6509856-6509896)
[»] chr3 (4 HSPs)
chr3 (246-328)||(28424311-28424393)
chr3 (6-51)||(28424587-28424632)
chr3 (125-191)||(28424448-28424513)
chr3 (282-329)||(45807043-45807090)
[»] chr8 (3 HSPs)
chr8 (246-327)||(23388234-23388315)
chr8 (125-191)||(23388367-23388433)
chr8 (6-55)||(23388503-23388552)
[»] chr7 (3 HSPs)
chr7 (6-55)||(42840951-42841000)
chr7 (250-329)||(42840750-42840830)
chr7 (282-322)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (282-321)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (282-329)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (282-328)||(17050398-17050444)
chr1 (282-328)||(51606914-51606960)
chr1 (282-314)||(38688643-38688675)
chr1 (282-314)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (295-331)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 329 - 449
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  329 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 427  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  428 gcaacatgtgatcgtgatgtcc 449  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaac 322  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 28424393 - 28424311
Alignment:
Q  246 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 328  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424393 caggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 28424311  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 28424632 - 28424587
Alignment:
Q  6 agaagcagagaagaggaacaataagaaagatgcagagaaggagagc 51  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  28424632 agaagcagagaagaggaacaataagaaagatgcagagaagaagagc 28424587  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 28424513 - 28424448
Alignment:
Q  125 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 191  Q
    ||||| ||||||||||| ||||||| ||||| || | |||||||||||||| |||||||||||||||    
T  28424513 aacagcgtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtc 28424448  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 329  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 23388315 - 23388234
Alignment:
Q  246 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccac 327  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23388315 caggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgccac 23388234  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 23388433 - 23388367
Alignment:
Q  125 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23388433 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtc 23388367  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 23388552 - 23388503
Alignment:
Q  6 agaagcagagaagaggaacaataagaaagatgcagagaaggagagctgag 55  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  23388552 agaagcagggaagaggaacaataagaaagatgcagagaagaagagctgag 23388503  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 42841000 - 42840951
Alignment:
Q  6 agaagcagagaagaggaacaataagaaagatgcagagaaggagagctgag 55  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  42841000 agaagcagagaagaggaacaataagaaagatgcagagaagaaaagctgag 42840951  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 42840830 - 42840750
Alignment:
Q  250 tcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 329  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840830 tcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaac 322  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaa 321  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 329  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 328  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 328  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttccca 314  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  282 tttcccatcatgggaaacaactttgctttccca 314  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  295 gaaacaactttgctttcccaggctaaacgccacctat 331  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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