View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10241_low_5 (Length: 368)
Name: NF10241_low_5
Description: NF10241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10241_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 45400430 - 45400094
Alignment:
| Q |
17 |
agaacaaagattgaaaagagattttggtgaaaatgttcaactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttccat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45400430 |
agaacaaagattgaaaagagattttggtgaaaatgttcaactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttccat |
45400331 |
T |
|
| Q |
117 |
ctaacaaattttcttatgatacaagcattctaacaaactaaccaaccaattgaatgattcaacaattacgacatctcggtnnnnnnnttgaaatataccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
45400330 |
ctaacaaattttcttatgatacaagcattctaacaaactaaccaaccaattgaatgattcaacaattacgccatctcggtaaaaaaattgaaatataccc |
45400231 |
T |
|
| Q |
217 |
atgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45400230 |
atgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatc |
45400131 |
T |
|
| Q |
317 |
acaccagttcttaaagagacgatacaaaaatacttac |
353 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
45400130 |
acaccagtccttaaagagacgatacaaaaatacttac |
45400094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 27363509 - 27363846
Alignment:
| Q |
17 |
agaacaaagattgaaaagagattttggtgaaaatgttca-actaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttcca |
115 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27363509 |
agaacaaagattgaaaagagatt-----gaaaatgttcatactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttcca |
27363603 |
T |
|
| Q |
116 |
tctaacaaattttcttatgatacaagcattctaacaaactaaccaaccaattgaatgattcaacaattacgacatctcggtnnnnnnnttgaaatatacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
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|
| T |
27363604 |
tctaacaaattttcttatgatacaagcattctaacaaactaaccaaccaattgaatgattcaacaattacgccatcttggtaaaaaaattgaaatatacc |
27363703 |
T |
|
| Q |
216 |
catgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27363704 |
catgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcaacttaaacat |
27363803 |
T |
|
| Q |
316 |
cacaccagttcttaaagagacgatacaaaaatacttacctttg |
358 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
27363804 |
cacaccagtctttaaagagacgatacaaaaatacttacttttg |
27363846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 13031918 - 13032030
Alignment:
| Q |
240 |
tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgat |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| ||| ||| | | ||| ||||||| |
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| T |
13031918 |
tttatagcttatgaaaccaaacaccttacaattatatcattgaaaatcata-ttaattgttgaacggcttaaatatcgcactaatctttatgaagacgat |
13032016 |
T |
|
| Q |
340 |
acaaaaatacttac |
353 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13032017 |
acaaaaatacttac |
13032030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 24665280 - 24665332
Alignment:
| Q |
240 |
tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatt |
292 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24665280 |
tttatagcttatgaaaccaaacaccttacaattttatcacttaaaatcatatt |
24665332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 24630364 - 24630415
Alignment:
| Q |
240 |
tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatat |
291 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
24630364 |
tttatagcttatgaaatcaaacaccttacaattttatcacttaaaattatat |
24630415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 11853955 - 11853842
Alignment:
| Q |
29 |
gaaaagagattttggtgaaaatgttcaactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttccatctaacaaatttt |
128 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||| ||| ||||||| |||||||||||||||||||||||| || ||||| ||||||||| || || |
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| T |
11853955 |
gaaaggagattttggtgaaagggttcaactgaatattactgatcaagtaatgccttatataggcttattgtacaagagaaactaccatctaactaacttg |
11853856 |
T |
|
| Q |
129 |
cttatgatacaagc |
142 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
11853855 |
cttgtgatgcaagc |
11853842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 34589373 - 34589246
Alignment:
| Q |
35 |
agattttggtgaaaatgttcaactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaacttccatctaacaaattttcttatg |
134 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || ||||| ||| ||||||||| || |||||| ||| ||||| ||||| ||| ||||| ||| || |
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|
| T |
34589373 |
agattttggtgaaaatgttcaactgaatattttttatcaagttatggcttatatagactaattgtacaagtgaaactaccatcaaactaatttgcttgtg |
34589274 |
T |
|
| Q |
135 |
atacaagcattctaacaaactaaccaac |
162 |
Q |
| |
|
| ||||| |||||||||||||||||| |
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|
| T |
34589273 |
ttgcaagctatctaacaaactaaccaac |
34589246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 34521534 - 34521576
Alignment:
| Q |
240 |
tttatagattatgaaaccaaacaccttacaattatatcactta |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34521534 |
tttatagcttatgaaaccaaacaccttacaattttatcactta |
34521576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 34534367 - 34534409
Alignment:
| Q |
240 |
tttatagattatgaaaccaaacaccttacaattatatcactta |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
34534367 |
tttatagcttatgaaaccaaacaccttacaattttaccactta |
34534409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 26841178 - 26841221
Alignment:
| Q |
248 |
ttatgaaaccaaacaccttacaattatatcacttaaaatcatat |
291 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
26841178 |
ttatgaaatcaaacaccttacaattatctcacttaaaatcatat |
26841221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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