View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10242_high_3 (Length: 253)
Name: NF10242_high_3
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10242_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 41026233 - 41025998
Alignment:
| Q |
18 |
agttacggtagactataaaagtcatatacactatatataaagatttcttgtttgtgcctttatttgagtataatatactcttactatgtatgcacatcgt |
117 |
Q |
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| T |
41026233 |
agttacggtagactataaaagtcatatacaccatatataaagatttcttgtttgtgcctttatttgagtataatatactcttactatgtatgcacatcgt |
41026134 |
T |
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| Q |
118 |
cgtagtatcctcccctctttcctttccatttccattgttggaaaactaaagcaagtggacccaaaatctaccttgtttgcatcttcaaatttgaaaccta |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41026133 |
cgtaatatcctcccctctttcctttccatttccattgttggaaaactaaagcaagtggacccaaaatctacctcgtttgcatcttcaaatttgaaaccta |
41026034 |
T |
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| Q |
218 |
gcctccttcataaattaatcgatccaaacaccaact |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41026033 |
gcctccttcataaattaatcgatccaaacaccaact |
41025998 |
T |
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