View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10242_low_1 (Length: 688)
Name: NF10242_low_1
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10242_low_1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 334 - 688
Target Start/End: Original strand, 4792380 - 4792734
Alignment:
| Q |
334 |
ctatagtcacatgatatttggttgcatctgttactgttccgtagcaaaagcctcaactgggaaagttttggtgataccagctaaactcttgaagtgaatc |
433 |
Q |
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| T |
4792380 |
ctatagtcacatgatatttagttgcatctattactgtcccgtagcaaaagcctcaactgggaaagttttggtgataccagctaaactcttgaagtgaatc |
4792479 |
T |
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| Q |
434 |
tttccattgagtgtttcatctatattaatttcattgacaggaggccgaagcatgagttctttggctttcacccctttgagcttcttaattttctttttca |
533 |
Q |
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| T |
4792480 |
tttccattgagtgtttcatctatattaatttcattgacaggaggccaaagcatgagttctttggctttcacccctttgagcttcttaattttctttttca |
4792579 |
T |
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| Q |
534 |
acatgtaaccattgatttcagtatcataactcaccaacttgccaatcaatttaaaggtgtgttcaactttcttcttctgctagatacgcatgtaaccggt |
633 |
Q |
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| T |
4792580 |
acatgtaaccattgatttcagtatcataactcaccaacttgccaatcaatttaaagttgtgttcaactttcttcttctgcaagatacgcatgtaatcggt |
4792679 |
T |
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| Q |
634 |
gtttctaacaaaactaacttcgattacatcggcgagtggaagaagtcctagtgga |
688 |
Q |
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| T |
4792680 |
gtttctaacaaaactaacttcgattacatcggcgagtggaagaagtcctagtgga |
4792734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 4788886 - 4789216
Alignment:
| Q |
1 |
accgttggagctagatagcttgagctagaagcaatcnnnnnnnnnnnnnnnnnatgcattcctttggttgttaaattgctagaatgaaatcagtttcaag |
100 |
Q |
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| T |
4788886 |
accgttggagctagatagcttgagctagaagcaatcatatatataaatatataatgcattcctttggttgttaaattgctagaatgaaatcagtttcaag |
4788985 |
T |
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| Q |
101 |
tctaacaaacacatagagtaaaaagagtgacaaaacaagagtgaattatggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattg |
200 |
Q |
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| T |
4788986 |
tctaacaaacacatagagtaaaa-gagtgacaaaacaagagtgaattctggcgagtttgttgcgagaatgagtcttaagctttgtgatttcacaccattg |
4789084 |
T |
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| Q |
201 |
taaacgttgattcatagtggagtttttgctcggattttaattgaggaaaaacatttagtaagaaacttaaaaacaaaagataacacttttattgtctagt |
300 |
Q |
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| T |
4789085 |
taaacgttgattcatagtggagtttttgctcggactctgatcgaggaaaaacatttagtaagaaacttaaaaacaaaagataacacttttattgcctagt |
4789184 |
T |
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| Q |
301 |
ttgaaattctttgaaaattaattgctctatag |
332 |
Q |
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| T |
4789185 |
ttgaaattctttgaaaattaattgctctatag |
4789216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 567
Target Start/End: Original strand, 39347624 - 39347815
Alignment:
| Q |
376 |
agcaaaagcctcaactgggaaagttttggtgataccagctaaactcttgaagtgaatctttccattgagtgtttcatctatattaatttcattgacagga |
475 |
Q |
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| T |
39347624 |
agcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcatcaacagtaatctcattaacaggt |
39347723 |
T |
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| Q |
476 |
ggccgaagcatgagttctttggctttcacccctttgagcttcttaattttctttttcaacatgtaaccattgatttcagtatcataactcac |
567 |
Q |
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| T |
39347724 |
ggccataacatgagttccttagctttcacgcctttaagtttcttaatcttcttctttgaaatgtaacctgttatctcagtatcatagctcac |
39347815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 376 - 528
Target Start/End: Original strand, 39345437 - 39345589
Alignment:
| Q |
376 |
agcaaaagcctcaactgggaaagttttggtgataccagctaaactcttgaagtgaatctttccattgagtgtttcatctatattaatttcattgacagga |
475 |
Q |
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||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||| |||||| | || |||||| | | |||| ||||||| |||| |
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| T |
39345437 |
agcaaaagcttcaacagggaaagtcttggtgataccaccataactcttgaaatgaatttttccagttggttcttcatcaacaataatctcattgatagga |
39345536 |
T |
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| Q |
476 |
ggccgaagcatgagttctttggctttcacccctttgagcttcttaattttctt |
528 |
Q |
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| T |
39345537 |
ggccgtaacatgagttctttaacattaacacctttaagcatcttaatattctt |
39345589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 20724414 - 20724527
Alignment:
| Q |
122 |
aaagagtgacaaaacaagagtgaattatggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattgtaaacgttgattcatagtgga |
221 |
Q |
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| T |
20724414 |
aaagagtga-aaaacaggagtgaaatctagtgagtttggtgagataatgagtctcaagtcttgtgatttcacaccagtgtaagcattgattcgtagtgga |
20724512 |
T |
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| Q |
222 |
gtttttgctcggatt |
236 |
Q |
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| T |
20724513 |
gtttttgctcggatt |
20724527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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