View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10242_low_4 (Length: 344)
Name: NF10242_low_4
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10242_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 46680483 - 46680794
Alignment:
| Q |
1 |
atataatattgaaggcatgcgcgcatctttgac---gaaagtttgagacacagtcaacatcatatatccatgccatactctgcaatgcaatctaaaaact |
97 |
Q |
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| T |
46680483 |
atataatattgaaggcacgcgcgcatctttgactgagacagtttgagacacagtcaacatcatatatccatgccatactctccaatgcaatctaaaaact |
46680582 |
T |
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| Q |
98 |
cctataaatacaattttatagtacaatgc-----aatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaatt |
192 |
Q |
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| T |
46680583 |
cctataaatacaattttatagtagaatgcaatctaatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaatt |
46680682 |
T |
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| Q |
193 |
aatattcat--aaactttcagctttaattctctggcattccacataataacctgaccaaacttcaacttaattcccaaacatatatttgatggagagaac |
290 |
Q |
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| T |
46680683 |
aatattcataaaaactttcagctttaattc--------------------cctgaccaaacttcaacttaattcccaaacatatatttgatggagagaac |
46680762 |
T |
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| Q |
291 |
acaatcatcacttctacagattcagcctccta |
322 |
Q |
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| T |
46680763 |
acaatcatcacttctacagattcagcctccta |
46680794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 46676737 - 46676812
Alignment:
| Q |
247 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacagattcagcctccta |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46676737 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacaaattcagcctccta |
46676812 |
T |
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