View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10242_low_5 (Length: 305)
Name: NF10242_low_5
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10242_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 120 - 287
Target Start/End: Original strand, 52542831 - 52542998
Alignment:
| Q |
120 |
aacctgtgcaccagttgcatcccctttaataaccgtcggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
219 |
Q |
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| T |
52542831 |
aacctgtgcaccagttgcatcccctttaataactgttggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
52542930 |
T |
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| Q |
220 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagt |
287 |
Q |
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| T |
52542931 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagt |
52542998 |
T |
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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
19 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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