View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10242_low_6 (Length: 260)
Name: NF10242_low_6
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10242_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 20933903 - 20933673
Alignment:
| Q |
18 |
gttccaatgcttgttttgaaagaccgtttgatgtagccaatgagaaacacatggttgttatggttgctgcatatggactttgctggagaaattctatctc |
117 |
Q |
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| T |
20933903 |
gttccaatgcttgttttgaaagaccgtttgatgtagccaatgagaaacacatggttgttatggttgctgcatatggactttgctggagaaattctatctc |
20933804 |
T |
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| Q |
118 |
gatctatggtttgcttaatttggtatatggcagagggaagattaggttcaaaagcatttgggtgctgcttatgttggtatatgatagagggaagttttgg |
217 |
Q |
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| T |
20933803 |
gatctatggtttgcttaatttggtatatgacagagggaagatttggttcaaaagcatttgggtgctgcttatgttggtatatgatagagggaagttttgg |
20933704 |
T |
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| Q |
218 |
tccttaagcatttgggtgaaattgatgtcca |
248 |
Q |
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| T |
20933703 |
tccttaagcatttgggtgaaattgatgtcca |
20933673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 24156985 - 24157064
Alignment:
| Q |
169 |
aagcatttgggtgctgcttatgttggtatatgatagagggaagttttggtccttaagcatttgggtgaaattgatgtcca |
248 |
Q |
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| T |
24156985 |
aagcatttggatgcagcttaatttagtatatgatagagggcagttttggtccttaagcatttgggtgcaattgatatcca |
24157064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 54360890 - 54360987
Alignment:
| Q |
119 |
atctatggtttgcttaatttggtatatggcagagggaagattaggttcaaaagcatttgggtgctgcttatgttggtatatgatagagggaagttttg |
216 |
Q |
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| T |
54360890 |
atctatggtttgcttaatttggtatatgacagagggaagatttggttcaaaagcatttgggtgctgcttatgttggtatatgacagaggaaagttttg |
54360987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 24213350 - 24213429
Alignment:
| Q |
169 |
aagcatttgggtgctgcttatgttggtatatgatagagggaagttttggtccttaagcatttgggtgaaattgatgtcca |
248 |
Q |
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| T |
24213350 |
aagcatttgggtgcggcttaatttggtatatgatagagggaagttttggtcgtcaagcatttgggtgcaattgatatcca |
24213429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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