View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10242_low_9 (Length: 209)

Name: NF10242_low_9
Description: NF10242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10242_low_9
NF10242_low_9
[»] chr1 (5 HSPs)
chr1 (4-201)||(33799732-33799929)
chr1 (7-110)||(37716190-37716293)
chr1 (13-121)||(17540767-17540875)
chr1 (10-95)||(42910657-42910742)
chr1 (3-71)||(4693448-4693516)
[»] chr7 (4 HSPs)
chr7 (1-201)||(13850920-13851120)
chr7 (2-121)||(12464239-12464358)
chr7 (32-88)||(9600934-9600990)
chr7 (32-88)||(9828505-9828561)
[»] chr2 (5 HSPs)
chr2 (1-121)||(10235538-10235658)
chr2 (4-201)||(32115809-32116006)
chr2 (34-183)||(9678149-9678298)
chr2 (23-104)||(21829778-21829859)
chr2 (45-200)||(19176737-19176892)
[»] chr3 (7 HSPs)
chr3 (15-194)||(22757944-22758123)
chr3 (1-196)||(33856591-33856786)
chr3 (25-112)||(4994712-4994799)
chr3 (30-118)||(28623849-28623937)
chr3 (30-110)||(30187941-30188021)
chr3 (1-72)||(41737210-41737281)
chr3 (10-72)||(11306719-11306781)
[»] chr8 (2 HSPs)
chr8 (2-97)||(16683522-16683617)
chr8 (19-104)||(20695419-20695504)
[»] chr5 (2 HSPs)
chr5 (11-121)||(23647346-23647456)
chr5 (11-121)||(23811117-23811227)
[»] scaffold0015 (1 HSPs)
scaffold0015 (7-83)||(5561-5637)
[»] scaffold0011 (1 HSPs)
scaffold0011 (10-72)||(249040-249102)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 33799929 - 33799732
Alignment:
Q  4 gtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgtta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  33799929 gtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggattcttgaccctattaatggttattccgtta 33799830  T
Q  104 atgggacatataattatccgaggacggcaggtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggtctctgtg 201  Q
    || |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  33799829 attggacatataattatccgacgacggcaggtgtctcttctgagcgtggtttgttcgacgatttgtggaagtagcaagtttcgcttaaggtctctgtg 33799732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 37716190 - 37716293
Alignment:
Q  7 tccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatg 106  Q
    |||||||||| |||||| ||||  |||||||||||| ||| | ||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||| |    
T  37716190 tccgagtgtgtgtctctattgcacaatgttgttttgcaggcccatattcatgacaggtggcgatggattcttgaccctattaatggctataccgttaaag 37716289  T
Q  107 ggac 110  Q
    ||||    
T  37716290 ggac 37716293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 17540767 - 17540875
Alignment:
Q  13 tgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacat 112  Q
    |||| |||| |||||||||||||||||||  ||| | ||||| ||||||||| | ||||| |||||||||||||||| || ||||  ||||| ||||| |    
T  17540767 tgtgtgtctatgttgcgtaatgttgttttccaggtccatatttatgacaggttgtggtggattcttgaccctattaacggctattatgttaaggggactt 17540866  T
Q  113 ataattatc 121  Q
    |||||||||    
T  17540867 ataattatc 17540875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 42910657 - 42910742
Alignment:
Q  10 gagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggtta 95  Q
    |||||| ||||| ||||| ||||| |||||||| ||||| || ||| ||| |||||||||| | || | || ||||||||||||||    
T  42910657 gagtgttcgtctttgttgtgtaatattgttttgcaggaccatgttcttgataggtggcggttggttttggatcctattaatggtta 42910742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 4693448 - 4693516
Alignment:
Q  3 agtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtg 71  Q
    |||| |||||||| ||||  ||||| ||||| |||||||| ||||  || |||||||||||||||||||    
T  4693448 agttaccgagtgttcgtccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggtg 4693516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 13850920 - 13851120
Alignment:
Q  1 acagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcg 100  Q
    ||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||||||||||| |     
T  13850920 acagtttccgagtgtgcatctctgttgcataatgttgttttgcatgaccatattcatgacaggtggcagtggattcttgaccctattaatggttattcca 13851019  T
Q  101 ttaatgggacatataattatccgaggacggcaggtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggtctctgt 200  Q
     ||| |||||||||| |||||  |  ||||||||||||||||| |||||| || ||||||| ||||| ||||||||||||||| || |||||||||||||    
T  13851020 ataaggggacatatacttatctcacaacggcaggtgtctcttcggagcgtggtatgttcgacgatttgtggaagaagcaagttccggttaaggtctctgt 13851119  T
Q  201 g 201  Q
    |    
T  13851120 g 13851120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 12464239 - 12464358
Alignment:
Q  2 cagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgt 101  Q
    ||||| |||| ||||||| ||| |||| |||||||||| || ||||  | |||| |||||||||||  ||| | ||||||| ||||||||| ||||  ||    
T  12464239 cagttaccgaatgtgcgtttctattgcataatgttgttctgcaggataacattcttgacaggtggcattggatccttgaccatattaatggatattatgt 12464338  T
Q  102 taatgggacatataattatc 121  Q
    ||| ||||| ||||| ||||    
T  12464339 taaggggacttataactatc 12464358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 9600990 - 9600934
Alignment:
Q  32 atgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctatta 88  Q
    |||||||||||||||| | || || |||||||||||||||| | ||||| |||||||    
T  9600990 atgttgttttgtaggattctactcttgacaggtggcggtggatccttgatcctatta 9600934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 9828561 - 9828505
Alignment:
Q  32 atgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctatta 88  Q
    |||||||||||||||| | || || |||||||||||||||| | ||||| |||||||    
T  9828561 atgttgttttgtaggattctactcttgacaggtggcggtggatccttgatcctatta 9828505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 10235658 - 10235538
Alignment:
Q  1 acagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcg 100  Q
    ||||| || |||||||| |||||||||| ||||||||||||| ||||  |||||| ||||||||||| |||| |||||||||| ||||||||||||||||    
T  10235658 acagtgtcggagtgtgcatctctgttgcataatgttgttttgcaggaacatattcttgacaggtggcagtggattcttgaccccattaatggttatttcg 10235559  T
Q  101 ttaatgggacatataattatc 121  Q
    |||| |||||||||| |||||    
T  10235558 ttaaggggacatatacttatc 10235538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 32115809 - 32116006
Alignment:
Q  4 gtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgtta 103  Q
    ||||| |||||||| ||| |||||| |||||||||||||  |||  ||| || |||||||||| ||||| |||| |||||||||||||||||||  ||||    
T  32115809 gtttcagagtgtgcatctttgttgcataatgttgttttgcgggatcataatcttgacaggtggaggtggattctcgaccctattaatggttattctgtta 32115908  T
Q  104 atgggacatataattatccgaggacggcaggtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggtctctgtg 201  Q
    | |||||||||| |||||  | |||  |||||||  |||  |||||| || |||| ||||| || |||||||||||| || | |||||||||||||||    
T  32115909 aggggacatatacttatctcatgacaccaggtgttcctttggagcgtggtatgtttgatgaattgtggaagaagcaaattcctcttaaggtctctgtg 32116006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 9678298 - 9678149
Alignment:
Q  34 gttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacatataattatccgaggacggcag 133  Q
    ||||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||   ||| |||  ||||| || || ||||||||||    ||||||||    
T  9678298 gttgttttgcaggacaatatttgtgacagatggcggtggattcttgaccctattcgaggtcattatgttaagggaacttataattatcttgtgacggcag 9678199  T
Q  134 gtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtt 183  Q
     || | ||| ||| ||| |||||||||||||| | ||| |||||||||||    
T  9678198 ctgccccttatgatcgtggtttgttcgatgatgtgtggcagaagcaagtt 9678149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 21829778 - 21829859
Alignment:
Q  23 tgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaa 104  Q
    ||||| |||||||||||||| |||| | |  || |||||||||| ||||| ||||||| |||||||||||||||| ||||||    
T  21829778 tgttgtgtaatgttgttttgcaggattcttctcttgacaggtggtggtggattcttgatcctattaatggttattccgttaa 21829859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 19176737 - 19176892
Alignment:
Q  45 ggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacatataattatccgaggacggcaggtgtctcttct 144  Q
    |||| |||||| |||||||||  ||||| | |||||||||||||||||||||| |||||| || || || | |||||  | |||| ||  ||||  |||     
T  19176737 ggaccatattcttgacaggtgaaggtggatgcttgaccctattaatggttattccgttaagggtacttacacttatctcacgacgccaaatgtccattcc 19176836  T
Q  145 gagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggtctctgt 200  Q
    |||||| |   ||| |||||||||||||||| ||||||| |||||||  |||||||    
T  19176837 gagcgtggccggtttgatgatttttggaagatgcaagttccgcttaaaatctctgt 19176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 22758123 - 22757944
Alignment:
Q  15 tgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacatat 114  Q
    |||||||||||||||||||||||||||| ||||| |||||| | |||||||| ||||| || ||||  ||||||| ||||||||| ||||  ||||||||    
T  22758123 tgcgtctctgttgcgtaatgttgttttgcaggaccatattcttaacaggtggtggtggattgttgattctattaacggttatttcattaagaggacatat 22758024  T
Q  115 aattatccgaggacggcaggtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggt 194  Q
    ||||||  || ||  ||| ||| |||||||||| |  |||||||||| ||| | ||| ||||||||||| |||| |||||    
T  22758023 aattatttgacgatcgcatgtgcctcttctgagtgcggtttgttcgacgatctgtggcagaagcaagttccgctgaaggt 22757944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33856786 - 33856591
Alignment:
Q  1 acagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcg 100  Q
    ||||| || |||||||| |||||||||| ||||||||||||| ||||| |||||  |||||||||||||||| |||||||||||||| |||| |||| ||    
T  33856786 acagtgtctgagtgtgcatctctgttgcataatgttgttttgcaggaccatattattgacaggtggcggtggattcttgaccctattcatggctattccg 33856687  T
Q  101 ttaatgggacatataattatccgaggacggcaggtgtctcttctgagcgttgtttgttcgatgatttttggaagaagcaagtttcgcttaaggtct 196  Q
    | || || || |||| |||||  | |||| ||| || |  | | |||||| |  ||||||||||| | |||| ||||||||||  |||||||||||    
T  33856686 tcaagggcacttatacttatctcacgacgtcagatgaccttccggagcgtggcatgttcgatgatctgtggaggaagcaagttctgcttaaggtct 33856591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 4994712 - 4994799
Alignment:
Q  25 ttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacat 112  Q
    |||| ||||||||||||| ||||  |||||| ||||||||||| |||| |||||||||| ||||||||||||| |||||| |||||||    
T  4994712 ttgcataatgttgttttgcaggatcatattcttgacaggtggcagtggattcttgaccccattaatggttattccgttaaggggacat 4994799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 28623937 - 28623849
Alignment:
Q  30 taatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggacatataatt 118  Q
    |||| |||||||||||||| |||||  ||||| |||| ||||| |||| |||| |||||||||||||| ||||| |||||| |||||||    
T  28623937 taatattgttttgtaggaccatattgttgacaagtggaggtggcttctcgaccttattaatggttattccgttagtgggacttataatt 28623849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 30188021 - 30187941
Alignment:
Q  30 taatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggac 110  Q
    ||||||||| ||| |||| | ||||  |||||||||||||||| ||||||| |||||||||||||||| |||||| |||||    
T  30188021 taatgttgtcttgcaggattttatttctgacaggtggcggtggattcttgatcctattaatggttattccgttaaggggac 30187941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41737281 - 41737210
Alignment:
Q  1 acagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtgg 72  Q
    ||||| || |||||||| ||| |||||| ||||||||||||| ||||| |||||  ||||||||||||||||    
T  41737281 acagtgtctgagtgtgcatctttgttgcataatgttgttttgcaggaccatattattgacaggtggcggtgg 41737210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 11306781 - 11306719
Alignment:
Q  10 gagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtgg 72  Q
    |||||||| ||||| |||| ||||||||||||| ||||| ||| |  ||||||||||||||||    
T  11306781 gagtgtgcatctctattgcataatgttgttttgcaggacaatactgttgacaggtggcggtgg 11306719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 16683522 - 16683617
Alignment:
Q  2 cagtttccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatt 97  Q
    |||| ||| ||||||| |||||||||| ||||||||||||| | ||| |||||  |||||||||||||||| ||||| ||||||||||||||||||    
T  16683522 cagtgtcccagtgtgcatctctgttgcataatgttgttttgcaagaccatattattgacaggtggcggtggcttcttaaccctattaatggttatt 16683617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 20695419 - 20695504
Alignment:
Q  19 tctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaa 104  Q
    ||||||||||  |||||||||||| ||||| |||||  |||||||||||||||| ||||| |||||||| |||| |||| ||||||    
T  20695419 tctctgttgcagaatgttgttttgcaggaccatattattgacaggtggcggtggattcttaaccctattcatggctattccgttaa 20695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 23647456 - 23647346
Alignment:
Q  11 agtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggac 110  Q
    ||||||| ||| |||||| ||||||||||||| ||||  |||||| ||||||||||| |||| |||||||||| ||||||||||||   | ||| |||||    
T  23647456 agtgtgcatctatgttgcataatgttgttttgcaggatcatattcttgacaggtggcagtggattcttgaccccattaatggttatactgataaggggac 23647357  T
Q  111 atataattatc 121  Q
    ||||| |||||    
T  23647356 atatatttatc 23647346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 23811117 - 23811227
Alignment:
Q  11 agtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccctattaatggttatttcgttaatgggac 110  Q
    ||||||| ||| |||||| ||||||||||||| ||||  |||||| ||||||||||| |||| |||||||||| ||||||||||||   | ||| |||||    
T  23811117 agtgtgcatctatgttgcataatgttgttttgcaggatcatattcttgacaggtggcagtggattcttgaccccattaatggttatactgataaggggac 23811216  T
Q  111 atataattatc 121  Q
    ||||| |||||    
T  23811217 atatatttatc 23811227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 5637 - 5561
Alignment:
Q  7 tccgagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtggtttcttgaccc 83  Q
    ||||||||||| |||||||||  ||||||||||||| ||||| | | |  |||||||||||||||||| || |||||    
T  5637 tccgagtgtgcatctctgttgtataatgttgttttgcaggaccagacttttgacaggtggcggtggttgctcgaccc 5561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 249040 - 249102
Alignment:
Q  10 gagtgtgcgtctctgttgcgtaatgttgttttgtaggactatattcatgacaggtggcggtgg 72  Q
    |||||||| ||| |||||| ||||||||||||| ||||| ||| |  ||||||||||||||||    
T  249040 gagtgtgcatctttgttgcataatgttgttttgcaggaccatactactgacaggtggcggtgg 249102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University