View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10243_high_2 (Length: 348)

Name: NF10243_high_2
Description: NF10243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10243_high_2
NF10243_high_2
[»] chr2 (15 HSPs)
chr2 (18-344)||(8375224-8375550)
chr2 (18-344)||(8439553-8439879)
chr2 (132-344)||(8417671-8417883)
chr2 (133-269)||(8394788-8394924)
chr2 (133-269)||(8406405-8406541)
chr2 (133-269)||(8412525-8412661)
chr2 (133-269)||(8434623-8434759)
chr2 (133-269)||(8395031-8395167)
chr2 (166-269)||(8431553-8431653)
chr2 (166-242)||(8368815-8368891)
chr2 (166-242)||(8400519-8400595)
chr2 (166-242)||(8422096-8422172)
chr2 (294-334)||(41119330-41119370)
chr2 (164-262)||(8404470-8404568)
chr2 (18-55)||(8417881-8417918)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 8375224 - 8375550
Alignment:
Q  18 atttaatggatccaaagatcaaatagaaaggaataataatgttgtcctcacaacacaatcacatgatgagttgtacagacataacaataagaagtcaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8375224 atttaatggatccaaagatcaaatagaaaggaataataatgttgtcctcacaacacaatcacatgatgagttgtacagacaaaacaataagaagtcaaat 8375323  T
Q  118 gctattattaaattatatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8375324 gctattattaaattatatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctct 8375423  T
Q  218 tgaactccatcaacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8375424 tgaactccatcaacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaa 8375523  T
Q  318 gttatcttctgctcttttattctctgc 344  Q
    |||||||||||||||||||||||||||    
T  8375524 gttatcttctgctcttttattctctgc 8375550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 8439879 - 8439553
Alignment:
Q  18 atttaatggatccaaagatcaaatagaaaggaataataatgttgtcctcacaacacaatcacatgatgagttgtacagacataacaataagaagtcaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8439879 atttaatggatccaaagatcaaatagaaaggaataataatgttgtcctcacaacacaatcacatgatgagttgtacagacaaaacaataagaagtcaaat 8439780  T
Q  118 gctattattaaattatatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8439779 gctattattaaattatatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctct 8439680  T
Q  218 tgaactccatcaacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8439679 tgaactccatcaacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaa 8439580  T
Q  318 gttatcttctgctcttttattctctgc 344  Q
    |||||||||||||||||||||||||||    
T  8439579 gttatcttctgctcttttattctctgc 8439553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 132 - 344
Target Start/End: Complemental strand, 8417883 - 8417671
Alignment:
Q  132 atatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaac 231  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||| |||||| | ||||  ||||||||||||||||||||||||||||| |||||||||    
T  8417883 atatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaac 8417784  T
Q  232 atgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttctgctc 331  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| | |  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  8417783 atgattactctcactgctacaaccatgtctggtcttgctgctactgttcccactacttgctcagattcatcacttttggctttgaagttatcttctgctc 8417684  T
Q  332 ttttattctctgc 344  Q
    |||| || |||||    
T  8417683 ttttgttttctgc 8417671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 8394788 - 8394924
Alignment:
Q  133 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 232  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8394788 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 8394887  T
Q  233 tgattactcttactgctacaaccatgtctggtgttgc 269  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8394888 tgattactctcactgctacaaccatgtctggtgttgc 8394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 8406541 - 8406405
Alignment:
Q  133 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 232  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8406541 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 8406442  T
Q  233 tgattactcttactgctacaaccatgtctggtgttgc 269  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8406441 tgattactctcactgctacaaccatgtctggtgttgc 8406405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 8412661 - 8412525
Alignment:
Q  133 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 232  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8412661 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 8412562  T
Q  233 tgattactcttactgctacaaccatgtctggtgttgc 269  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8412561 tgattactctcactgctacaaccatgtctggtgttgc 8412525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 8434759 - 8434623
Alignment:
Q  133 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 232  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8434759 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 8434660  T
Q  233 tgattactcttactgctacaaccatgtctggtgttgc 269  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8434659 tgattactctcactgctacaaccatgtctggtgttgc 8434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 8395031 - 8395167
Alignment:
Q  133 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 232  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8395031 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaaaa 8395130  T
Q  233 tgattactcttactgctacaaccatgtctggtgttgc 269  Q
    |||||||||| |||||||||||||||||||| |||||    
T  8395131 tgattactctcactgctacaaccatgtctggagttgc 8395167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 8431653 - 8431553
Alignment:
Q  166 gaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactcttactgctacaaccatgtctggtg 265  Q
    ||||||||||| |||||||||||||   ||||||| ||||| | |||||| |||||||| || |||||||||||||| |||||||  || ||||||||||    
T  8431653 gaaatgcatcacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtg 8431557  T
Q  266 ttgc 269  Q
    ||||    
T  8431556 ttgc 8431553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 8368891 - 8368815
Alignment:
Q  166 gaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactct 242  Q
    |||||||||||||||||||||||||| ||  | |||||||| || ||||| || ||||||||||||||||| |||||    
T  8368891 gaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactct 8368815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 8400519 - 8400595
Alignment:
Q  166 gaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactct 242  Q
    |||||||||||||||||||||||||| ||  | |||||||| || ||||| || ||||||||||||||||| |||||    
T  8400519 gaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactct 8400595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 8422096 - 8422172
Alignment:
Q  166 gaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactct 242  Q
    |||||||||||||||||||||||||| ||  | |||||||| || ||||| || ||||||||||||||||| |||||    
T  8422096 gaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactct 8422172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 41119370 - 41119330
Alignment:
Q  294 tgattcatcacttttggctttgaagttatcttctgctcttt 334  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  41119370 tgattcatcacttttggctttgaagttgtcttatgctcttt 41119330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 8404568 - 8404470
Alignment:
Q  164 ttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactcttactgctacaaccatgtctg 262  Q
    ||||||||||| ||||| | ||  |||| ||| ||||||||||||| ||| | || ||||||||||||||||| || || || ||| |||| |||||||    
T  8404568 ttgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcacagcttcaacaatgtctg 8404470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 8417918 - 8417881
Alignment:
Q  18 atttaatggatccaaagatcaaatagaaaggaataata 55  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  8417918 atttaatggattcaaagatcaattagaaaggaataata 8417881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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