View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10243_low_1 (Length: 599)
Name: NF10243_low_1
Description: NF10243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10243_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 25471213 - 25470904
Alignment:
| Q |
18 |
gtaactgtgtccgacgacgatttcggcaatgttcgttctaaattcggataatatcttgcctttgaagtctacattgagatattaaaaccttgaaggttaa |
117 |
Q |
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| T |
25471213 |
gtaactgtgtccgacgacgatttcggcaatgttcgttctaaattcggataatatcttgcctttgaagtctgcattgagatattaaaaccttgaaggttaa |
25471114 |
T |
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| Q |
118 |
agttatgttccaacatatacaaagctgttgtcaagtgaaacaactttaattgctaagataggtgattcacgacttaatttccaaaagctgaaatttccaa |
217 |
Q |
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| T |
25471113 |
agttatgttccaacatatacaaagctgttgtcaagtgaaacaactttaattgctaagataggtgattcacgacttaatttccaaaagctgaaatttccaa |
25471014 |
T |
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| Q |
218 |
gggtgtgtgggtaattgtcatagagaatgtgctgtattatattctgagtttcaaatcaatatggcacaattggatcgtcctgctgttgcaactcgttgtt |
317 |
Q |
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| T |
25471013 |
gggtgtgtgggtaattgtcatagagaatgtgctgtattatattctgagtttcaaatcaatatggcacaattggatcgtcctgctgttgcaactcgttgtt |
25470914 |
T |
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| Q |
318 |
gtgcacaagc |
327 |
Q |
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| T |
25470913 |
gtgcacaagc |
25470904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 321 - 586
Target Start/End: Complemental strand, 25453807 - 25453542
Alignment:
| Q |
321 |
cacaagcggtccctcaaaatccaagtgatgccttgcactaggcatgaaatcaagttcttgtgattgggaaaatcgaagcatcctaaatgcatctcaaggc |
420 |
Q |
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| T |
25453807 |
cacaagcggtccctcaaaatccaagtgatgccttgcactaggcatgaaatcaagttcttgtgattgggaaaatcgaagcatcctaaatgcatctcaaggc |
25453708 |
T |
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| Q |
421 |
acttgtttagggcctatgcttggcagtaatattgacgatgttaagcgaaactcatggccgaagtggtgctttgtagagcaagttggtggacnnnnnnnnn |
520 |
Q |
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| T |
25453707 |
acttgtttagggcctatgcttggcagtaatattgacgatgttaagcgaaactcatggcctaagtggtgctttgtagagcaagttggtggacttttttttt |
25453608 |
T |
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| Q |
521 |
gttgctcttaccgtttacttagaatatcagctgcaattgggtcaggctgcataggtttaatgatgt |
586 |
Q |
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| T |
25453607 |
gttgctcttaccgtttacttagaatatcagctgcaattgggtcaggctgcataggtttaatgatgt |
25453542 |
T |
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