View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10243_low_3 (Length: 347)
Name: NF10243_low_3
Description: NF10243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10243_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 31082909 - 31083237
Alignment:
| Q |
18 |
aggtccgataatgggactgaatatacatgtgaaaaatttaacaaattttgtgaagatgcaggcattgaacatcaactaacagcaccatacactccacaac |
117 |
Q |
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| T |
31082909 |
aggtccgataatgggactgaatatacatgtgaaaaatttaacaaattttgtgaagatgcagacattgaacatcaactaacagcaccatacactccacaac |
31083008 |
T |
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| Q |
118 |
agaatagtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgc |
217 |
Q |
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| T |
31083009 |
agaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgc |
31083108 |
T |
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| Q |
218 |
aaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaagcttggcataacagcaaaccaaagctaattaat |
317 |
Q |
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| T |
31083109 |
aaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaagcttggcatagcagcaaaccaaagctaattaat |
31083208 |
T |
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| Q |
318 |
ctgaagacattcggctgcctatgcttctc |
346 |
Q |
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| T |
31083209 |
ctgaagacattcggctgcctatgtttctc |
31083237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 9308128 - 9308460
Alignment:
| Q |
14 |
catcaggtccgataatgggactgaatatacatgtgaaaaatttaacaaattttgtgaagatgcaggcattgaacatcaactaacagcaccatacactcca |
113 |
Q |
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| T |
9308128 |
catcaggtccgataatgggactgaatatacatgtgaaaaatttaacaaattttgtgaagatgcaggcattgaacatcaactaacagcaccatacactcca |
9308227 |
T |
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| Q |
114 |
caacagaatagtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagagg |
213 |
Q |
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| T |
9308228 |
caacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagagg |
9308327 |
T |
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| Q |
214 |
ctgcaaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaagcttggcataacagcaaaccaaagctaat |
313 |
Q |
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| T |
9308328 |
ctacaaatactgcagtttttctgctgaacagattgtcaacaaaagctgtgcagaaaaagactccatttgaagcttggcatagcagcaaaccaaagctaat |
9308427 |
T |
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| Q |
314 |
taatctgaagacattcggctgcctatgcttctc |
346 |
Q |
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| T |
9308428 |
taatctgaagacattcggctgcctatgtttctc |
9308460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 32147757 - 32147827
Alignment:
| Q |
150 |
attatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgcaaa |
220 |
Q |
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| T |
32147757 |
attatggagatggaaagatgcttgctacatgaaaaagattttccaaaaaagttgtgggcagaggctgcaaa |
32147827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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