View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10243_low_6 (Length: 217)

Name: NF10243_low_6
Description: NF10243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10243_low_6
NF10243_low_6
[»] chr1 (10 HSPs)
chr1 (19-202)||(30698519-30698702)
chr1 (23-202)||(30689637-30689816)
chr1 (23-201)||(30718680-30718858)
chr1 (23-202)||(30710406-30710585)
chr1 (19-195)||(30656577-30656753)
chr1 (23-201)||(30671742-30671920)
chr1 (100-178)||(16252066-16252144)
chr1 (100-177)||(33042601-33042678)
chr1 (119-174)||(30623894-30623949)
chr1 (166-202)||(15815181-15815217)
[»] chr4 (1 HSPs)
chr4 (28-195)||(56539165-56539332)
[»] chr2 (2 HSPs)
chr2 (116-174)||(4420146-4420204)
chr2 (123-165)||(38337632-38337674)
[»] chr7 (1 HSPs)
chr7 (119-167)||(38830756-38830804)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 30698519 - 30698702
Alignment:
Q  19 agatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30698519 agatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgagaatgca 30698618  T
Q  119 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  30698619 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatctctg 30698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 30689637 - 30689816
Alignment:
Q  23 ccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagctt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||| ||||||||||    
T  30689637 ccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagctt 30689736  T
Q  123 gatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30689737 gatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgtctctg 30689816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 30718680 - 30718858
Alignment:
Q  23 ccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagctt 122  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||| ||||||||||    
T  30718680 ccttctctgcaatcatattgaatcgcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagctt 30718779  T
Q  123 gatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718780 gatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 30718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 30710406 - 30710585
Alignment:
Q  23 ccttttctgcaatcatattgaatctcttgcaaagattctttgac-cttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagct 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  30710406 ccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaa-agaaaaattgaggaaagcattattacctctcattgaaaatgcagct 30710504  T
Q  122 tgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30710505 tgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctg 30710585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 30656577 - 30656753
Alignment:
Q  19 agatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  30656577 agatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgca 30656676  T
Q  119 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | || || ||||||||    
T  30656677 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccaccccttgttgt 30656753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 30671742 - 30671920
Alignment:
Q  23 ccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagctt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  30671742 ccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacggcattattacctctcattgaaaatgcagctt 30671841  T
Q  123 gatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || || |||||||| |||||    
T  30671842 gatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtctct 30671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 16252066 - 16252144
Alignment:
Q  100 acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccctt 178  Q
    |||||||||||| || |||||||||||||||||||  || ||  |||||||||||||||||||||| | ||| ||||||    
T  16252066 acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt 16252144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 33042678 - 33042601
Alignment:
Q  100 acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccct 177  Q
    ||||||||| || || || |||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||| |||||    
T  33042678 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 33042601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 30623894 - 30623949
Alignment:
Q  119 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 174  Q
    |||||||||||||||||||||||| |||||||  |||||||||| |||| ||||||    
T  30623894 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaac 30623949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 15815217 - 15815181
Alignment:
Q  166 aagccaaacccttcttcctcctcttgttgtatctctg 202  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15815217 aagccaaacccttcttcctcctcttgctgtatctctg 15815181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 56539332 - 56539165
Alignment:
Q  28 tctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagcttgatca 127  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||     
T  56539332 tctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcg 56539233  T
Q  128 taagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt 195  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||  |||||||||    
T  56539232 taagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt 56539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 4420146 - 4420204
Alignment:
Q  116 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 174  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  4420146 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 4420204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 38337674 - 38337632
Alignment:
Q  123 gatcataagctaaagcagcatcttcagcactatcaaatgttcc 165  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttcc 38337632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 38830804 - 38830756
Alignment:
Q  119 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaa 167  Q
    ||||| |||||||||||||||||  |||||||  |||||||||||||||    
T  38830804 gcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaa 38830756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University