View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10244_1 (Length: 621)
Name: NF10244_1
Description: NF10244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10244_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 223 - 595
Target Start/End: Complemental strand, 6958665 - 6958295
Alignment:
| Q |
223 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgaagaagacgttgtcaaattggctcga |
322 |
Q |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgac--aggctttgtcaaattggttcga |
6958568 |
T |
|
| Q |
323 |
atctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtgagaccgacaattttcaagcagaattcaaa |
422 |
Q |
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| T |
6958567 |
atctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaa |
6958468 |
T |
|
| Q |
423 |
cttcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatattgatgtaatcta |
522 |
Q |
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| T |
6958467 |
cttcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatcta |
6958368 |
T |
|
| Q |
523 |
gaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttga |
595 |
Q |
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| T |
6958367 |
gaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttga |
6958295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 6958870 - 6958693
Alignment:
| Q |
30 |
ctattatgtgtaatgttcttctggaacctctttgtgctttcctgttaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgct |
126 |
Q |
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| T |
6958870 |
ctattatgtgtaatgtccttctgaaacctctttgtgctttactattaataaagatagggttctaaatatattgaattcaaagaatatgctagctactgct |
6958771 |
T |
|
| Q |
127 |
cataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataatatctacacgaac |
204 |
Q |
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| T |
6958770 |
cataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataatatctacacgaac |
6958693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 30575232 - 30575384
Alignment:
| Q |
36 |
tgtgtaatgttcttctggaacctctttgtgctttcctgttaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgctcataaa |
132 |
Q |
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|||||||||| |||| |||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
30575232 |
tgtgtaatgtccttcaggaatctctctgtgttttcctgttaataaagatagggtcctgaatatattgaattcaaagaatatgctagctactgctcatgaa |
30575331 |
T |
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| Q |
133 |
tttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
185 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30575332 |
tttgaagactttgatttcaattagttttcagcataaaacttcaatctttaaaa |
30575384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 23006964 - 23007116
Alignment:
| Q |
36 |
tgtgtaatgttcttctggaacctctttgtgctttcctgttaataaagatagggtt---aatatattgaattcaaagaatatgctagctactgctcataaa |
132 |
Q |
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|||||||||| |||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
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| T |
23006964 |
tgtgtaatgtccttcaggaacctctctgtgttttcctgttaataaagatagggtcctgaatatattgaattcaaagaatatgcttgctactgctcatgaa |
23007063 |
T |
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| Q |
133 |
tttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
185 |
Q |
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|||| |||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
23007064 |
tttgaagactttgatttcaattagttttcggcataaaacttcaatctttaaaa |
23007116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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