View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10244_2 (Length: 400)
Name: NF10244_2
Description: NF10244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10244_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 65 - 371
Target Start/End: Complemental strand, 22698638 - 22698330
Alignment:
| Q |
65 |
tgtaaataatagcgatcaaatacggccgatatggcctcaaaagctgtcatgttaaggttttggtaacataaaaaactgttactctgcagcttagatcgct |
164 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22698638 |
tgtaaagaatagcgatgaaatacggctgatatggcttcaaaagctgtcatgttaaggttttggtaacataaaaaactgttactctgcggcttagatcgct |
22698539 |
T |
|
| Q |
165 |
atcgtcaacctttgtttaaaaccctgattacaaatataatattattaattaggatcgagtttcgaaaaagctatacaaccacgatcttgactacgacatc |
264 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22698538 |
atcgccaacctttgtttaaaaccctgattacaaatataatattatta----ggatcgagttttgaaaaagctatacaaccacgatcttgactacgacatc |
22698443 |
T |
|
| Q |
265 |
aaggtttttgtcgtcttcatgactg--gttgagatcgcattggcgacatttgactgcaatttaaaacaacttg----tgcttgtctgtttgtgtgcactt |
358 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22698442 |
aaggtttttgtcgtcttcatgactgtggttgagaacgcattggcgacatttgactgcaatttaaaacaacttgcttgtgtatgtctgtttgtgtgcactt |
22698343 |
T |
|
| Q |
359 |
ttgaatataaagt |
371 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22698342 |
ttgaatataaagt |
22698330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22698683 - 22698640
Alignment:
| Q |
1 |
ataataaggtttacaagcatgtttttaaatagcagttgtggtca |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22698683 |
ataataaggtttacaagcatgtttttaaatagcagttttggtca |
22698640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 22687839 - 22687803
Alignment:
| Q |
252 |
tgactacgacatcaaggtttttgtcgtcttcatgact |
288 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
22687839 |
tgactacgacatcaaggtttttgttgtcttcacgact |
22687803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University