View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10244_4 (Length: 312)
Name: NF10244_4
Description: NF10244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10244_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 43170224 - 43170518
Alignment:
| Q |
16 |
aacctgtgtccgacactccatgtactaatctgcagcagtgaccaaaataaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatac |
115 |
Q |
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| T |
43170224 |
aacctgtgtccgacactccatgtactaatctgcagcagtgaccaaaataaaaccacacaaacatgagaatagagaaaaatttcaagtttaaaaacaatac |
43170323 |
T |
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| Q |
116 |
aaagaacacgagcagcatttacccgcgtcatagtagatgtatcccagagctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctc |
215 |
Q |
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| T |
43170324 |
aaagaacacaagcag--tttacccgtgtcatagtagatgtatcccagagctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctg |
43170421 |
T |
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| Q |
216 |
ccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacagaatcatagaaaccatcggaatcactacaaagaacaactgtatca |
312 |
Q |
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| T |
43170422 |
ccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacagaatcatagaaaccatcggaatcactacaaagaacaactatatca |
43170518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 43218109 - 43217825
Alignment:
| Q |
19 |
ctgtgtccgacactccatgtactaatctgcagcagtgaccaaaataaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaa |
118 |
Q |
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| T |
43218109 |
ctgtgtccgacactccatgtactaatctgcagcagtgaccaaaataaaaccacacaaacatgagaatagagaacaatttcaagtttaaaaacaatacaaa |
43218010 |
T |
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| Q |
119 |
gaacacgagcagcatttacccgcgtcatagtagatgtatcccagagctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctccca |
218 |
Q |
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| T |
43218009 |
gaacacaagcag--tttacccgtgtcatagtagatgtatcccagagctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgcca |
43217912 |
T |
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| Q |
219 |
gctaacacttgtgataggaccatcttccagcgttgtagggagagcaacagaatcatagaaaccatcggaatcactacaaagaacaac |
305 |
Q |
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| T |
43217911 |
gctaacacttgtgataggaccatcttccagcgttgtagggagagcaacagaatcatagaaaccatcggaatcactacaaagaacaac |
43217825 |
T |
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