View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10244_low_1 (Length: 471)
Name: NF10244_low_1
Description: NF10244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10244_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 24941319 - 24941762
Alignment:
| Q |
17 |
acatataggtgattgagcacacaggagaatcctcagttgcatgagttccccatcacgatcattatattatctctatcaactttcactctgaaattattac |
116 |
Q |
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| T |
24941319 |
acatataggtgattgagcacacaggagaatcctcagttgcatgtgttccccatcacgatcattatattatctctatcaactttcactctgaaatta---c |
24941415 |
T |
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| Q |
117 |
atgtcatgtattggtgtatttgtgtttatattcttaatcttaatactttgagaattaagataggattgacggcgtaacttgtcggcagcttgacttccat |
216 |
Q |
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| T |
24941416 |
atgtcatgtattggtgtatttgtgtttatattcttaatcttaatactttgagaattaagataggattgacggcgtaacttgttggcagcttgacttccat |
24941515 |
T |
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| Q |
217 |
ttagatatatagatgaaatttggaaaaggaaaaaattgttatattgctttnnnnnnnntgagaattgtgatgatcaattgtgaagtgccaagtatctacc |
316 |
Q |
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| T |
24941516 |
ttagatatatagatgaaatttggaaaagaaaaaaattgttatattgctttaaaaaaaatgagaattgtgatgatcaattgtgaagtgccaagtatctacc |
24941615 |
T |
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| Q |
317 |
gttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggnnnnnnngccaggacaatgtagttctagaagtaattttctaatccaa |
416 |
Q |
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| T |
24941616 |
gttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggtttttttgcccggacaatgtagttctaaaagtaattttctattccaa |
24941715 |
T |
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| Q |
417 |
catgattcagacactaaattaagtactccacgatattcatcctacgt |
463 |
Q |
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| T |
24941716 |
catgattcagacactaaattaagtactccacgatattcgtcctacgt |
24941762 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 5417078 - 5417135
Alignment:
| Q |
380 |
aggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
437 |
Q |
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| T |
5417078 |
aggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacatta |
5417135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 875534 - 875584
Alignment:
| Q |
387 |
tgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
437 |
Q |
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| T |
875534 |
tgtagttctaaaagtagatttcaaatccaacatgattcagacactacatta |
875584 |
T |
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