View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10245_1 (Length: 846)

Name: NF10245_1
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10245_1
NF10245_1
[»] chr4 (16 HSPs)
chr4 (6-524)||(5159249-5159760)
chr4 (6-338)||(5195065-5195406)
chr4 (6-299)||(5181710-5182008)
chr4 (393-525)||(5181476-5181608)
chr4 (166-271)||(5172489-5172594)
chr4 (659-761)||(5172211-5172314)
chr4 (166-271)||(4843028-4843133)
chr4 (171-270)||(5212716-5212815)
chr4 (474-525)||(5194831-5194882)
chr4 (10-84)||(4842849-4842927)
chr4 (463-524)||(4843278-4843339)
chr4 (6-56)||(5172630-5172680)
chr4 (424-459)||(5172339-5172374)
chr4 (282-316)||(4843149-4843183)
chr4 (526-564)||(4843423-4843461)
chr4 (526-560)||(5172102-5172136)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 524
Target Start/End: Complemental strand, 5159760 - 5159249
Alignment:
Q  6 attgacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||| |||||    
T  5159760 attgacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatttcattgtttttgttaattatttaaaatttaaaa 5159661  T
Q  102 tcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttg 201  Q
    ||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||     
T  5159660 tcaataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcagttatgaattaattatttgtgtttggtagtattcataccttc 5159573  T
Q  202 aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag-nnnnnnnngagagtacatagttagagat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  5159572 aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagat 5159473  T
Q  301 ataattttcaataaataaatctgtaagaactattcccc-nnnnnnntttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcata 399  Q
    |||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||        |||||||||    
T  5159472 ataa-tttcaataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcata 5159374  T
Q  400 tgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||    
T  5159373 tgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggc 5159274  T
Q  500 atactatcgcgtcaaagaggaaatg 524  Q
    |  |||||||||||||||| |||||    
T  5159273 aacctatcgcgtcaaagagaaaatg 5159249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 5195406 - 5195065
Alignment:
Q  6 attgacattatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    |||||||| |||||||||||||||||||||||| ||||    
T  5195406 attgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcgttgtttttgttaattatttaaaatttaaa 5195307  T
Q  101 atcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcatacctt 200  Q
    || || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  5195306 ataaaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgatacctt 5195207  T
Q  201 gaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag----nnnnnnnngagagtacatagttag 296  Q
     ||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||            ||||||||||||||||    
T  5195206 caattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttag 5195107  T
Q  297 agatataattttcaataaataaatctgtaagaactattcccc 338  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  5195106 agatataattttcaataaataaatcggtaagaactattcccc 5195065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 5182008 - 5181710
Alignment:
Q  6 attgacattatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    ||||||||||| ||||||||||||||||||||| ||||    
T  5182008 attgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcattctttttgttaattatttaaaatttaaa 5181909  T
Q  101 atcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcatacctt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  5181908 atcaatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgatacctt 5181809  T
Q  201 gaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga 299  Q
     |||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  5181808 caattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga 5181710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 393 - 525
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
Q  393 gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga 492  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  5181608 gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga 5181509  T
Q  493 agtcggcatactatcgcgtcaaagaggaaatgg 525  Q
    ||||||||  |||||||||||||||||||||||    
T  5181508 agtcggcaacctatcgcgtcaaagaggaaatgg 5181476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 5172594 - 5172489
Alignment:
Q  166 aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca 265  Q
    |||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  5172594 aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaaca 5172495  T
Q  266 tctgca 271  Q
    ||||||    
T  5172494 tctgca 5172489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 659 - 761
Target Start/End: Complemental strand, 5172314 - 5172211
Alignment:
Q  659 ctatcttaggaaatacaaaagctcccgttcatttcaccattgggtttcaacaatag-caatatcacattggtgttcaaccttgtgaaactttaccattca 757  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||    
T  5172314 ctatgttaggaaatacaaaagctccggttcatttcaccattgggtttcaacaatagccaatatcacattggtgatcaaccttatgaaacttcaccattca 5172215  T
Q  758 ttac 761  Q
    ||||    
T  5172214 ttac 5172211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 4843028 - 4843133
Alignment:
Q  166 aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca 265  Q
    |||||||||||| |||||| ||||||| ||||||| ||||||||| ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  4843028 aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaaca 4843127  T
Q  266 tctgca 271  Q
    ||||||    
T  4843128 tctgca 4843133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 5212815 - 5212716
Alignment:
Q  171 attatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc 270  Q
    ||||||||||||||||| |||| ||||||| || |||||||||||||||||| | || |||| ||| ||||||||||||| |||||||||||||||||||    
T  5212815 attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc 5212716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
Q  474 gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 525  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5194882 gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 5194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4842849 - 4842927
Alignment:
Q  10 acattatcataaaaatcttaaagtttttccaatggcgtcaatatatacatca----acttatttcattgtttttgttaa 84  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| || |    |||||||||||||||||||||||    
T  4842849 acattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcattgtttttgttaa 4842927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 463 - 524
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
Q  463 aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg 524  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  4843278 aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg 4843339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 5172680 - 5172630
Alignment:
Q  6 attgacattatcataaaaatcttaaagtttttccaatggcgtcaatatata 56  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5172680 attgacattatcataaaaatcttaaagtttttccaatggactcaatatata 5172630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 459
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
Q  424 caaattcttggagaatcctagatgacaaattggtat 459  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5172374 caaattcttggagaatccttgatgacaaattggtat 5172339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
Q  282 agagtacatagttagagatataattttcaataaat 316  Q
    |||||||||||||||||||||||| ||||||||||    
T  4843149 agagtacatagttagagatataatattcaataaat 4843183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 564
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
Q  526 aaagagtattatgtggagagtgacaaaacatattttttc 564  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  4843423 aaagagtattatgtggagagtggcaaaccatattttttc 4843461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
Q  526 aaagagtattatgtggagagtgacaaaacatattt 560  Q
    |||||||||||||||||||||| ||||||||||||    
T  5172136 aaagagtattatgtggagagtggcaaaacatattt 5172102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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