View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_4 (Length: 536)
Name: NF10245_4
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 44351329 - 44351863
Alignment:
| Q |
1 |
aagaatgatggaggagcaaatagagtatgacgaagaagtcttgcaagaaactaatgaattacttcttaaactagaagaagaagtcaaaactttagatgct |
100 |
Q |
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| T |
44351329 |
aagaatgatggaggagcaaatagagtatgatgaagaagtcttgcaagaaactaatgaattacttcttaaactagaagaagaagtcaaaactttagatgct |
44351428 |
T |
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| Q |
101 |
gaattggagatttatagagataaatatggatgtttgacagaagatgatattaaggctcatggtggcaataacttcccatttaggtccgttgaaggcgagg |
200 |
Q |
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| T |
44351429 |
gaattggagatttatagagataaatatggatgtttgacagaagatgatattaaggctcatggtggcaataacttcccatttaggtccgttgaaggcgagg |
44351528 |
T |
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| Q |
201 |
atgatgtggaaaaagaccttgatcttggtcaacctgattcatcgaaggcagataatggagagggaaagttcaaggaatcactaaaagattttagaatgga |
300 |
Q |
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| T |
44351529 |
atgatgtggaaaaagaccttgatcttggtcaacctgattcatcgaaggcaaataatggagggggaaagttcaaggaatcactaaaagattttagaatgga |
44351628 |
T |
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| Q |
301 |
gaaaacatatcttcttgcgcggaagaaaatggaaaatggatatcccttgacagagaattgaatatgagatggtagtattgtaatggtgttctttaaggta |
400 |
Q |
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| T |
44351629 |
gaaaacatatcttcttgcgcggaagaaaatggaaaatggatatcccttgacagagaattgaatatgagatggtagtattgtaatggtgttctttaaggta |
44351728 |
T |
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| Q |
401 |
aacaatgcacggtcgtgatttgattccctcatgttttgtgtgctcaaacccaaatggtaagagtcgcgatagtttggtttcataaggttgccacgcaagt |
500 |
Q |
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| T |
44351729 |
aacaatgcacggtcgcgatttgattccctcatgtttagtgtgctcaaa-ccaaatggtaagagtcgcgatagtttggtttcctaaggttaccacacaagt |
44351827 |
T |
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| Q |
501 |
agtaaaagcaggagtaaaattacttgatctcactgc |
536 |
Q |
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| T |
44351828 |
agtagaagcaagagtaaaattacttgatctcactgc |
44351863 |
T |
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