View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_5 (Length: 427)
Name: NF10245_5
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_5 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 38057076 - 38056794
Alignment:
| Q |
14 |
agatcagaaatatcataatgcatgtatgcatgattgaaataatatgaatgaatgaatgtcgtcgtcttcgtcttcttcacgttccaaatcaaatgctgct |
113 |
Q |
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| T |
38057076 |
agatcagaaatatcataatgcatgtatgcatgattgaaataatatgaatgaatgaatgtcgtcgtcttcgtcttcttcacgttccaaatcaaatgctgct |
38056977 |
T |
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| Q |
114 |
aattctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacactacaaacacctcgcctgacaatagtgtcaagaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056976 |
aattctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacactacaaacacctcgcctgacaatagtgtcaagaatg |
38056877 |
T |
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| Q |
214 |
agaaaaagaaaaaggttcttttgctatatacactttctttctttctttgtaattttcctcatgcattgcattgttattgagcc |
296 |
Q |
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| T |
38056876 |
agaaaaagaaaaaggttcttttgctatatacactttctttctttctttgtaattttcctcatgcattgcattgttattgagcc |
38056794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 38056764 - 38056644
Alignment:
| Q |
307 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056764 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
38056665 |
T |
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| Q |
407 |
aattagttttggtatttatta |
427 |
Q |
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| T |
38056664 |
aattagttttggtatttatta |
38056644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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