View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_6 (Length: 404)
Name: NF10245_6
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_6 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 46086516 - 46086747
Alignment:
| Q |
13 |
aatatatagcataagtttctcaaataagtttttcgtaatcataaggcttacataacaaaaaatccaagaaatgaaaattatacctgaccataagcgagaa |
112 |
Q |
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| T |
46086516 |
aatatatagcataagtttctcaaataagtttttcgcaatcataaggcttacgtaacaaaaaatccaagaaatgaaaattatacctgaccataagcgagaa |
46086615 |
T |
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| Q |
113 |
ccgtggcattatatccattgaaaagtgcatcaacgagcggtgctacacaatcattgtaaatcgtagatgaaggttgtcccgtgctaccatacacatactc |
212 |
Q |
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| T |
46086616 |
ccgtggcattatatccattgaaaagtgcatcaacgagcggtgctacacaatcatcgtaaatagtagatgaaggttgtcccgtgctaccatacacataatc |
46086715 |
T |
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| Q |
213 |
atacgtaaaggaatgagatccaatttgcacct |
244 |
Q |
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| T |
46086716 |
atacgtaaaggaatgagatccaatttgcacct |
46086747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 46086822 - 46086906
Alignment:
| Q |
320 |
gtagcacctgaggttcgccaggaacaacagaaatgcaatctgtgcaaccaaggagaagttcggacgtgatcagaggccgaatgtt |
404 |
Q |
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| T |
46086822 |
gtagcacctgaggttcgccaggaacaacagaaatgcaatctgtgcaaccaaggagaagttcggacgtgatcagaggccgaatgtt |
46086906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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