View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_7 (Length: 367)
Name: NF10245_7
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 2330198 - 2329846
Alignment:
| Q |
15 |
tatgaatgaaaataactattcggatttctagaattaattctcaacagaaaattgaaacagttttgtttagcttgaataggtatgaggttggtggtagctt |
114 |
Q |
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| T |
2330198 |
tatgaatgaaaataactatttggatttctacaaataattctcaacagacaattgaaacagttttgtttagcttgaataggtatgaggacggtggtagctt |
2330099 |
T |
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| Q |
115 |
tttaattacctgatttggaaaatagcatgcagaagaaaaagatgaaaagcacagtgattattgttgcaagtttgagtccacgtagatgataggatctagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2330098 |
tttaattacctgatttggaaaatagcatgcagaagaaaaagatgaaaagcacagtgattattgttgcaagtttgagtccatgtagatgataggatctagc |
2329999 |
T |
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| Q |
215 |
aggtggagccatcaatgagagaattaggattgatgcaagtaagtaacagtgaagaggtgtttgagaaaataatgaagaaatgttagaagcagtgaaaggg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2329998 |
aggtggagccatcaatgagagaattaggattgatgcaagtaagtaacagtgaagaggtgtttgagaaaataatgaagaaatgttagaagcagtgaaaggg |
2329899 |
T |
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| Q |
315 |
atggatgtgtgtaagatgaaatgtgttgtgatggaaatgaagatattttaaat |
367 |
Q |
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| T |
2329898 |
atggatgtgtgtaagatgaaatgtgttgtgatggaaatgaagagattttaaat |
2329846 |
T |
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