View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_8 (Length: 339)
Name: NF10245_8
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_8 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 28 - 320
Target Start/End: Original strand, 2489787 - 2490079
Alignment:
| Q |
28 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
127 |
Q |
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| T |
2489787 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
2489886 |
T |
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| Q |
128 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
227 |
Q |
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| T |
2489887 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
2489986 |
T |
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| Q |
228 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttctacatgtacaatgaattttctgtgctc |
320 |
Q |
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| T |
2489987 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttcgacatgtacaatgaattttttgtgctc |
2490079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 28 - 279
Target Start/End: Complemental strand, 41591199 - 41590948
Alignment:
| Q |
28 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
127 |
Q |
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||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
41591199 |
agaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggttgatagcatgcttgggcaacgaacaagagttgg |
41591100 |
T |
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| Q |
128 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
227 |
Q |
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| T |
41591099 |
ggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacgggctcacgacaaaacaaggagagcgcatccttgttcttgcagcaacc |
41591000 |
T |
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| Q |
228 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
279 |
Q |
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| T |
41590999 |
aataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 11094598 - 11094442
Alignment:
| Q |
28 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
127 |
Q |
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|||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| || |
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| T |
11094598 |
agaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatgctcggtcagcgtactagagtcgg |
11094499 |
T |
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| Q |
128 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
184 |
Q |
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|||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
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| T |
11094498 |
agaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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