View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10245_low_2 (Length: 245)
Name: NF10245_low_2
Description: NF10245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10245_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 36288337 - 36288178
Alignment:
| Q |
1 |
ccaaacatacgctgaagtaacgttgtaataccaaattccaacgtatcttgaagaagagttgttaaaactgaagaaacccatttcaaatctgagaccttct |
100 |
Q |
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| T |
36288337 |
ccaaacatacgctgaagtaacgttgtaataccaaattccaacgtatcttgaagaagagttgttaaaactgaagaaacccatttcaaatctgagaccttct |
36288238 |
T |
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| Q |
101 |
gagaccaaagtggaaccatctttgatagtttggttctgtgtgataaagtttgctgcatgc |
160 |
Q |
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| T |
36288237 |
gagaccaaagtggaaccatctttgatagtttggttctgtgtgataaagtttgctgcatgc |
36288178 |
T |
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Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12097237 - 12097396
Alignment:
| Q |
1 |
ccaaacatacgctgaagtaacgttgtaataccaaattccaacgtatcttgaagaagagttgttaaaactgaagaaacccatttcaaatctgagaccttct |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12097237 |
ccaaacatacgctgaagtaacgttgtagtaccaaattccaacgtatcttgaagatgaattgttaaaactgaagaaacccatttcaaatttgagaccttct |
12097336 |
T |
|
| Q |
101 |
gagaccaaagtggaaccatctttgatagtttggttctgtgtgataaagtttgctgcatgc |
160 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| |||||| |||||| ||||||| |
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| T |
12097337 |
gagaccaaagtggaactatctttgatagtttgattctgcgtgatagagtttgttgcatgc |
12097396 |
T |
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